Leandro Martínez

Publication Activity (10 Years)

Years Active: 2003-2024
Publications (10 Years): 11

Top Topics

Computer Viruses

Parametric Models

Top Venues

J. Chem. Inf. Model.

J. Comput. Chem.

Comput. Phys. Commun.

Publications

Ander Francisco Pereira, Leandro Martínez
Helical Content Correlations and Hydration Structures of the Folding Ensemble of the B Domain of Protein A. J. Chem. Inf. Model. 64 (8) (2024)
Leandro Martínez
CellListMap.jl: Efficient and customizable cell list implementation for calculation of pairwise particle properties within a cutoff. Comput. Phys. Commun. 279 (2022)
Guilherme F. Bottino, Allan J. R. Ferrari, Fábio C. Gozzo, Leandro Martínez
Structural discrimination analysis for constraint selection in protein modeling. Bioinform. 37 (21) (2021)
Martín Soñora, Leandro Martínez, Sergio Pantano, Matías R. Machado
Wrapping Up Viruses at Multiscale Resolution: Optimizing PACKMOL and SIRAH Execution for Simulating the Zika Virus. J. Chem. Inf. Model. 61 (1) (2021)
Alvaro J. Lopez, Emília P. Barros, Leandro Martínez
On the Interpretation of subtilisin Carlsberg Time-Resolved Fluorescence Anisotropy Decays: Modeling with Classical Simulations. J. Chem. Inf. Model. 60 (2) (2020)
Allan J. R. Ferrari, Fábio C. Gozzo, Leandro Martínez
Statistical force-field for structural modeling using chemical cross-linking/mass spectrometry distance constraints. Bioinform. 35 (17) (2019)
Allan J. R. Ferrari, Milan A. Clasen, Louise U. Kurt, Paulo C. Carvalho, Fábio C. Gozzo, Leandro Martínez
TopoLink: evaluation of structural models using chemical crosslinking distance constraints. Bioinform. 35 (17) (2019)
Alvaro J. Lopez, Leandro Martínez
Parametric models to compute tryptophan fluorescence wavelengths from classical protein simulations. J. Comput. Chem. 39 (19) (2018)
Luciano Censoni, Leandro Martínez
Prediction of kinetics of protein folding with non-redundant contact information. Bioinform. 34 (23) (2018)
Ricardo N. dos Santos, Allan J. R. Ferrari, Hugo C. R. de Jesus, Fábio C. Gozzo, Faruck Morcos, Leandro Martínez
Enhancing protein fold determination by exploring the complementary information of chemical cross-linking and coevolutionary signals. Bioinform. 34 (13) (2018)
Luciano Censoni, Heloisa dos Santos Muniz, Leandro Martínez
A network model predicts the intensity of residue-protein thermal coupling. Bioinform. 33 (14) (2017)
Juliano B. Francisco, José Mario Martínez, Leandro Martínez, Feodor Pisnitchenko
Inexact restoration method for minimization problems arising in electronic structure calculations. Comput. Optim. Appl. 50 (3) (2011)
Roberto Andreani, José Mario Martínez, Leandro Martínez, Flávio S. Yano
Low Order-Value Optimization and applications. J. Glob. Optim. 43 (1) (2009)
Leandro Martínez, Ricardo Andrade, Ernesto G. Birgin, José Mario Martínez
PACKMOL: A package for building initial configurations for molecular dynamics simulations. J. Comput. Chem. 30 (13) (2009)
Roberto Andreani, José Mario Martínez, Leandro Martínez, Flávio S. Yano
Continuous optimization methods for structure alignments. Math. Program. 112 (1) (2008)
Leandro Martínez, Roberto Andreani, José Mario Martínez
Convergent algorithms for protein structural alignment. BMC Bioinform. 8 (2007)
José Mario Martínez, Leandro Martínez
Packing optimization for automated generation of complex system's initial configurations for molecular dynamics and docking. J. Comput. Chem. 24 (7) (2003)