Paulo C. Carvalho

Publication Activity (10 Years)

Years Active: 2005-2022
Publications (10 Years): 5

Top Topics

Structural Models

Mass Spectrometry

Top Venues

Publications

Milan A. Clasen, Louise U. Kurt, Marlon D. M. Santos, Diogo B. Lima, Fan Liu, Fábio C. Gozzo, Valmir C. Barbosa, Paulo C. Carvalho
Increasing confidence in proteomic spectral deconvolution through mass defect. Bioinform. 38 (22) (2022)
Louise U. Kurt, Milan A. Clasen, Marlon D. M. Santos, Eduardo S. B. Lyra, Luana O. Santos, Carlos H. I. Ramos, Diogo B. Lima, Fábio C. Gozzo, Paulo C. Carvalho
Characterizing protein conformers by cross-linking mass spectrometry and pattern recognition. Bioinform. 37 (18) (2021)
Diogo B. Lima, André R. F. Silva, Mathieu Dupré, Marlon D. M. Santos, Milan A. Clasen, Louise U. Kurt, Priscila F. Aquino, Valmir C. Barbosa, Paulo C. Carvalho, Julia Chamot-Rooke
Top-Down Garbage Collector: a tool for selecting high-quality top-down proteomics mass spectra. Bioinform. 35 (18) (2019)
Allan J. R. Ferrari, Milan A. Clasen, Louise U. Kurt, Paulo C. Carvalho, Fábio C. Gozzo, Leandro Martínez
TopoLink: evaluation of structural models using chemical crosslinking distance constraints. Bioinform. 35 (17) (2019)
André R. F. Silva, Diogo B. Lima, Alejandro Leyva, Rosario Duran, Carlos Batthyany, Priscila F. Aquino, Juliana C. Leal, Jimmy E. Rodriguez, Gilberto B. Domont, Marlon D. M. Santos, Julia Chamot-Rooke, Valmir C. Barbosa, Paulo C. Carvalho
DiagnoProt: a tool for discovery of new molecules by mass spectrometry. Bioinform. 33 (12) (2017)
Diogo B. Lima, Yasset Pérez-Riverol, Fabio C. S. Nogueira, Gilberto B. Domont, Jesus Noda, Felipe da Veiga Leprevost, Vladimir Besada, Felipe M. G. França, Valmir Carneiro Barbosa, Aniel Sánchez, Paulo C. Carvalho
Effectively addressing complex proteomic search spaces with peptide spectrum matching. Bioinform. 29 (10) (2013)
Paulo C. Carvalho, John R. Yates III, Valmir Carneiro Barbosa
Improving the TFold test for differential shotgun proteomics. Bioinform. 28 (12) (2012)
Paulo C. Carvalho, Juliana S. G. Fischer, Jonas Perales, John R. Yates III, Valmir Carneiro Barbosa, Elias Bareinboim
Analyzing marginal cases in differential shotgun proteomics. Bioinform. 27 (2) (2011)
Paulo C. Carvalho, Xuemei Han, Tao Xu, Daniel Cociorva, Maria da Gloria Carvalho, Valmir Carneiro Barbosa, John R. Yates III
XDIA: improving on the label-free data-independent analysis. Bioinform. 26 (6) (2010)
Paulo C. Carvalho, Tao Xu, Xuemei Han, Daniel Cociorva, Valmir Carneiro Barbosa, John R. Yates III
YADA: a tool for taking the most out of high-resolution spectra. Bioinform. 25 (20) (2009)
Paulo C. Carvalho, Juliana S. G. Fischer, Emily I. Chen, John R. Yates III, Valmir Carneiro Barbosa
PatternLab for proteomics: a tool for differential shotgun proteomics. BMC Bioinform. 9 (2008)
Paulo C. Carvalho, Rafael V. Glória, Antonio Basílio de Miranda, Wim M. Degrave
Squid - a simple bioinformatics grid. BMC Bioinform. 6 (2005)