Kalle Karhu

Publication Activity (10 Years)

Years Active: 2010-2017
Publications (10 Years): 4

Top Topics

Hamming Distance

Pattern Matching

Document Retrieval

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Int. J. Comput. Assist. Radiol. Surg.

Publications

Elena Czeizler, Tommi Hirvola, Kalle Karhu
A Graph-Theoretical Approach for Motif Discovery in Protein Sequences. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (1) (2017)
Maureen van Eijnatten, Juha Koivisto, Kalle Karhu, Tymour Forouzanfar, Jan Wolff
The impact of manual threshold selection in medical additive manufacturing. Int. J. Comput. Assist. Radiol. Surg. 12 (4) (2017)
Travis Gagie, Aleksi Hartikainen, Kalle Karhu, Juha Kärkkäinen, Gonzalo Navarro, Simon J. Puglisi, Jouni Sirén
Document retrieval on repetitive string collections. Inf. Retr. J. 20 (3) (2017)
Travis Gagie, Aleksi Hartikainen, Kalle Karhu, Juha Kärkkäinen, Gonzalo Navarro, Simon J. Puglisi, Jouni Sirén
Document Retrieval on Repetitive String Collections. CoRR (2016)
Simon Gog, Kalle Karhu, Juha Kärkkäinen, Veli Mäkinen, Niko Välimäki
Multi-pattern matching with bidirectional indexes. J. Discrete Algorithms 24 (2014)
Travis Gagie, Kalle Karhu, Gonzalo Navarro, Simon J. Puglisi, Jouni Sirén
Document Listing on Repetitive Collections. CPM (2013)
Travis Gagie, Kalle Karhu, Juha Kärkkäinen, Veli Mäkinen, Leena Salmela, Jorma Tarhio
Indexed Multi-pattern Matching. LATIN (2012)
Simon Gog, Kalle Karhu, Juha Kärkkäinen, Veli Mäkinen, Niko Välimäki
Multi-pattern Matching with Bidirectional Indexes. COCOON (2012)
Kalle Karhu
Improving Exact Search of Multiple Patterns From a Compressed Suffix Array. Stringology (2011)
Kalle Karhu, Juho Mäkinen, Jussi Rautio, Jorma Tarhio, Hugh Salamon
GAST, a Genomic Alignment Search Tool. BIOINFORMATICS (2011)
Travis Gagie, Kalle Karhu, Juha Kärkkäinen, Veli Mäkinen, Leena Salmela
Pattern Kits CoRR (2010)