Julio C. Facelli

Publication Activity (10 Years)

Years Active: 1992-2024
Publications (10 Years): 30

Top Topics

Machine Learning

Conformal Prediction

Top Venues

J. Biomed. Informatics

J. Am. Medical Informatics Assoc.

Comput. Methods Programs Biomed.

Publications

Ashley C. Griffin, Karen H. Wang, Tiffany I. Leung, Julio C. Facelli
Recommendations to promote fairness and inclusion in biomedical AI research and clinical use. J. Biomed. Informatics 157 (2024)
Ryan Gardner, Joshua Wilkins, Sejal Mistry, Ramkiran Gouripeddi, Julio C. Facelli
Structural Homology of Epitope Binding Mimicry in the Onset of Type 1 Diabetes Mellitus. BIBM (2023)
Carlo Combi, Julio C. Facelli, Peter Haddawy, John H. Holmes, Sabine Koch, Hongfang Liu, Jochen Meyer, Mor Peleg, Giuseppe Pozzi, Gregor Stiglic, Pierangelo Veltri, Christopher C. Yang
Resuming HealthCare Informatics Research after CoViD-19: the HealthCare System Perspective. ICHI (2023)
Carlo Combi, Julio C. Facelli, Peter Haddawy, John H. Holmes, Sabine Koch, Hongfang Liu, Jochen Meyer, Mor Peleg, Giuseppe Pozzi, Gregor Stiglic, Pierangelo Veltri, Christopher C. Yang
The IHI Rochester Report 2022 on Healthcare Informatics Research: Resuming After the CoViD-19. J. Heal. Informatics Res. 7 (2) (2023)
Alexander S. Millar, John Arnn, Sam Himes, Julio C. Facelli
Uncertainty in Breast Cancer Risk Prediction: A Conformal Prediction Study of Race Stratification. MedInfo (2023)
Sejal Mistry, Naomi O. Riches, Ramkiran Gouripeddi, Julio C. Facelli
Environmental exposures in machine learning and data mining approaches to diabetes etiology: A scoping review. Artif. Intell. Medicine 135 (2023)
Sejal Mistry, Ramkiran Gouripeddi, Vandana Raman, Julio C. Facelli
Sequential data mining of infection patterns as predictors for onset of type 1 diabetes in genetically at-risk individuals. J. Biomed. Informatics 142 (2023)
Janette Vazquez, Julio C. Facelli
Conformal Prediction in Clinical Medical Sciences. J. Heal. Informatics Res. 6 (3) (2022)
Alan H. Morris, Christopher Horvat, Brian Stagg, David W. Grainger, Michael Lanspa, James Orme, Terry P. Clemmer, Lindell K. Weaver, Frank Thomas, Colin K. Grissom, Ellie Hirshberg, Thomas D. East, Carrie Jane Wallace, Michael P. Young, Dean F. Sittig, Mary Suchyta, James E. Pearl, Antinio Pesenti, Michela Bombino, Eduardo Beck, Katherine A Sward, Charlene R. Weir, Shobha Phansalkar, Gordon R. Bernard, B. Taylor Thompson, Roy Brower, Jonathon D. Truwit, Jay S. Steingrub, R. Duncan Hite, Douglas F. Willson, Jerry J. Zimmerman, Vinay Nadkarni, Adrienne G. Randolph, Martha A. Q. Curley, Christopher J. L. Newth, Jacques Lacroix, Michael S. D. Agus, Kang Hoe Lee, Bennett P. deBoisblanc, Frederick Alan Moore, R. Scott Evans, Dean K. Sorenson, Anthony Wong, Michael V. Boland, Willard H. Dere, Alan S. Crandall, Julio C. Facelli, Stanley M. Huff, Peter J. Haug, Ulrike Pielmeier, Stephen Edward Rees, Dan S. Karbing, Steen Andreassen, Eddy Fan, Roberta M. Goldring, Kenneth I Berger, Beno W. Oppenheimer, E. Wesley Ely, Brian W. Pickering, David A. Schoenfeld, Irena Tocino, Russell S. Gonnering, Peter J. Pronovost, Lucy A. Savitz, Didier Dreyfuss, Arthur S. Slutsky, James D. Crapo, Michael R. Pinsky, Brent James, Donald M. Berwick
Computer clinical decision support that automates personalized clinical care: a challenging but needed healthcare delivery strategy. J. Am. Medical Informatics Assoc. 30 (1) (2022)
Alan H. Morris, Brian Stagg, Michael Lanspa, James Orme, Terry P. Clemmer, Lindell K. Weaver, Frank Thomas, Colin K. Grissom, Ellie Hirshberg, Thomas D. East, Carrie Jane Wallace, Michael P. Young, Dean F. Sittig, Antonio Pesenti, Michela Bombino, Eduardo Beck, Katherine A. Sward, Charlene R. Weir, Shobha S. Phansalkar, Gordon R. Bernard, B. Taylor Thompson, Roy Brower, Jonathon D. Truwit, Jay S. Steingrub, R. Duncan Hite, Douglas F. Willson, Jerry J. Zimmerman, Vinay M. Nadkarni, Adrienne Randolph, Martha A. Q. Curley, Christopher J. L. Newth, Jacques Lacroix, Michael S. D. Agus, Kang H. Lee, Bennett P. deBoisblanc, R. Scott Evans, Dean K. Sorenson, Anthony Wong, Michael V. Boland, David W. Grainger, Willard H. Dere, Alan S. Crandall, Julio C. Facelli, Stanley M. Huff, Peter J. Haug, Ulrike Pielmeier, Stephen Edward Rees, Dan S. Karbing, Steen Andreassen, Eddy Fan, Roberta M. Goldring, Kenneth I. Berger, Beno W. Oppenheimer, E. Wesley Ely, Ognjen Gajic, Brian Pickering, David A. Schoenfeld, Irena Tocino, Russell S. Gonnering, Peter J. Pronovost, Lucy A. Savitz, Didier Dreyfuss, Arthur S. Slutsky, James D. Crapo, Derek Angus, Michael R. Pinsky, Brent James, Donald M. Berwick
Enabling a learning healthcare system with automated computer protocols that produce replicable and personalized clinician actions. J. Am. Medical Informatics Assoc. 28 (6) (2021)
Yulan Wang, Bernard Li, Ramkiran Gouripeddi, Julio C. Facelli
Human activity pattern implications for modeling SARS-CoV-2 transmission. Comput. Methods Programs Biomed. 199 (2021)
Lance T. Pflieger, Stefan M. Pulst, Julio C. Facelli
Characterization of Analytic and Experimental Uncertainty of RNA-seq Co-expression Network Determination: Application to SCA2. ICHI (2020)
Le-Thuy T. Tran, Ramkiran Gouripeddi, Julio C. Facelli
A Harmonized Framework to Evaluate Impacts of ECHO Pain and Opioid Training on Patients and Clinicians. AMIA (2020)
Xiangyang Ye, Qing T. Zeng, Julio C. Facelli, Diana I. Brixner, Mike Conway, Bruce E. Bray
Predicting Optimal Hypertension Treatment Pathways Using Recurrent Neural Networks. Int. J. Medical Informatics 139 (2020)
Richard L. Bradshaw, Ramkiran Gouripeddi, Julio C. Facelli
Concept Bag: A New Method for Computing Concept Similarity in Biomedical Data. IWBBIO (2) (2019)
Albert M. Lund, Ramkiran Gouripeddi, Julio C. Facelli
Generation and Classification of Activity Sequences for Spatiotemporal Modeling of Human Populations. CoRR (2019)
Ramkiran Gouripeddi, Le-Thuy T. Tran, Randy Madsen, Tanvi Gangadhar, Peter Mo, Nicole Burnett, Ryan Butcher, Katherine A. Sward, Julio C. Facelli
An Architecture for Metadata-driven Integration of Heterogeneous Sensor and Health Data for Translational Exposomic Research. BHI (2019)
Danielle Groat, Ramkiran Gouripeddi, Randy Madsen, Yu Kuei Lin, Julio C. Facelli
An Architecture to Support Real-World Studies that Investigate the Autonomic Nervous System. Poly/DMAH@VLDB (2019)
Naresh Sundar Rajan, Ramkiran Gouripeddi, Peter Mo, Randy Madsen, Julio C. Facelli
Towards a content agnostic computable knowledge repository for data quality assessment. Comput. Methods Programs Biomed. 177 (2019)
Ramkiran Gouripeddi, Le-Thuy T. Tran, Tanvi Gangadhar, Randy K. Madsen, Julio C. Facelli, Katherine A. Sward
Assimilating Pollen into Exposomes for Pediatric Asthma Research. AMIA (2019)
Tiago K. Colicchio, Guilherme Del Fiol, Debra L. Scammon, Julio C. Facelli, Watson A. Bowes III, Scott P. Narus
Comprehensive methodology to monitor longitudinal change patterns during EHR implementations: a case study at a large health care delivery network. J. Biomed. Informatics 83 (2018)
Juan M. R. Albano, Nahuel Mussini, Roxana Toriano, Julio C. Facelli, Marta B. Ferraro, Mónica Pickholz
Calcium interactions with Cx26 hemmichannel: Spatial association between MD simulations biding sites and variant pathogenicity. Comput. Biol. Chem. 77 (2018)
Samir E. AbdelRahman, Julio C. Facelli, Bruce E. Bray, Rashmee U. Shah, Guilherme Del Fiol
Extraction of Patient Temporal Patterns and Clusters from Clinical Data. AMIA (2017)
Anne M. Turner, Julio C. Facelli, Monique W. M. Jaspers, Thomas Wetter, Daniel Pfeifer, Laël Cranmer Gatewood, Terry Adam, Yu-Chuan Li, Ming-Chin Lin, R. Scott Evans, Anna L. Beukenhorst, Hugo Johan Theodoore van Mens, Esmée Tensen, Christian Bock, Laura Fendrich, Peter Seitz, Julian Suleder, Ranyah Aldekhyyel, Kent Bridgeman, Zhen Hu, Aaron Sattler, Shin-Yi Guo, Islam Md. Mohaimenul, Dina Nur Anggraini Ningrum, Hsin-Ru Tung, Jiantao Bian, Joseph Plasek, Casey A. Rommel, Juandalyn Burke, Harkirat Sohi
Solving Interoperability in Translational Health. Appl. Clin. Inform. 8 (02) (2017)
Tiago K. Colicchio, Guilherme Del Fiol, Watson A. Bowes III, Julio C. Facelli, Debra L. Scammon, Scott P. Narus
The Impact of Health IT Adoption: Are We Measuring the Right Outcomes? AMIA (2017)
Ramkiran Gouripeddi, Nicole Burnett, Mollie R. Cummins, Julio C. Facelli, Katherine A. Sward
A Conceptual Representation of Exposome in Translational Research. AMIA (2017)
Tiago K. Colicchio, Guilherme Del Fiol, Debra L. Scammon, Watson A. Bowes III, Julio C. Facelli, Scott P. Narus
Development and classification of a robust inventory of near real-time outcome measurements for assessing information technology interventions in health care. J. Biomed. Informatics 73 (2017)
Tiago K. Colicchio, Julio C. Facelli, Guilherme Del Fiol, Debra L. Scammon, Watson A. Bowes III, Scott P. Narus
Health information technology adoption: Understanding research protocols and outcome measurements for IT interventions in health care. J. Biomed. Informatics 63 (2016)
David E. Jones, Hamidreza Ghandehari, Julio C. Facelli
A review of the applications of data mining and machine learning for the prediction of biomedical properties of nanoparticles. Comput. Methods Programs Biomed. 132 (2016)
Tiago K. Colicchio, Julio C. Facelli, Guilherme Del Fiol, Debra L. Scammon, Watson A. Bowes III, Scott P. Narus
Assessment of the Heterogeneity of Outcome Measurements for IT Interventions in Health Care. AMIA (2016)
Julien C. Thibault, Daniel R. Roe, Julio C. Facelli, Thomas E. Cheatham III
Data model, dictionaries, and desiderata for biomolecular simulation data indexing and sharing. J. Cheminformatics 6 (1) (2014)
Phillip B. Warner, Peter Mo, N. Dustin Schultz, Ramkiran Gouripeddi, Jeffrey Duncan, Julio C. Facelli
VIRGO: Virtual Identity Resolution on the Go. ICHI (2014)
Julien C. Thibault, Thomas E. Cheatham III, Julio C. Facelli
iBIOMES Lite: Summarizing Biomolecular Simulation Data in Limited Settings. J. Chem. Inf. Model. 54 (6) (2014)
Shan He, Scott P. Narus, Julio C. Facelli, Lee Min Lau, Jeffrey R. Botkin, John F. Hurdle
A domain analysis model for eIRB systems: Addressing the weak link in clinical research informatics. J. Biomed. Informatics 52 (2014)
Ramkiran Gouripeddi, Naresh Sundar Rajan, Randy Madsen, Phillip B. Warner, Julio C. Facelli
Federating Air Quality Data with Clinical Data. AMIA (2014)
Jingran Wen, Daniel R. Scoles, Julio C. Facelli
Structure prediction of polyglutamine disease proteins: comparison of methods. BMC Bioinform. 15 (S-7) (2014)
Wayne B. Bradford, John F. Hurdle, Bernie LaSalle, Julio C. Facelli
Development of a HIPAA-compliant environment for translational research data and analytics. J. Am. Medical Informatics Assoc. 21 (1) (2014)
Dustin Schultz, Bernie LaSalle, Shan He, Ramkiran Gouripeddi, Ryan Butcher, Julio C. Facelli
Creating a Secure, Easily Accessible Environment for PHI Data Exports within FURTHeR utilizing REDCap. AMIA (2013)
Richard L. Bradshaw, N. Dustin Schultz, Julio C. Facelli, Randy Madsen, Ramkiran Gouripeddi, Ryan Butcher, Bernie LaSalle
Going FURTHeR with Three Federated Query Types. AMIA (2013)
Peter Mo, Randy Madsen, Richard L. Bradshaw, N. Dustin Schultz, Ryan Butcher, Bernie LaSalle, Ramkiran Gouripeddi, Julio C. Facelli
Federating caTissue with FURTHeR. AMIA (2013)
Julien C. Thibault, Julio C. Facelli, Thomas E. Cheatham III
iBIOMES: Managing and Sharing Biomolecular Simulation Data in a Distributed Environment. J. Chem. Inf. Model. 53 (3) (2013)
Naresh Sundar Rajan, Ramkiran Gouripeddi, Julio C. Facelli
A Service Oriented Framework to Assess the Quality of Electronic Health Data for Clinical Research. ICHI (2013)
Randy Madsen, Richard L. Bradshaw, N. Dustin Schultz, Ryan Butcher, Ramkiran Gouripeddi, Joyce A. Mitchell, Julio C. Facelli
Knowledge Driven Inclusion and Exclusion Criteria Refinement within the FURTHeR Framework. AMIA (2013)
Ramkiran Gouripeddi, Julio C. Facelli, Richard L. Bradshaw, Dustin Schultz, Bernie LaSalle, Phillip B. Warner, Ryan Butcher, Randy Madsen, Peter Mo
FURTHeR: An Infrastructure for Clinical, Translational and Comparative Effectiveness Research. AMIA (2013)
Kailah Davis, Ronald C. Price, Julio C. Facelli
Implementing public health analytical services: Grid enabling of MetaMap. CBMS (2013)
Ryan Butcher, Ramkiran Gouripeddi, Randy Madsen, Julio C. Facelli
Using Primitive Role Relationships in SNOMED to Enhance Concept Searching by Limiting Semantic Variability in FURTHeR. AMIA (2013)
Phillip B. Warner, Peter Mo, N. Dustin Schultz, Ramkiran Gouripeddi, Scott P. Narus, Julio C. Facelli
On the Fly Linkage of Records Containing Protected Health Information (PHI) Within the FURTHeR Framework. AMIA (2013)
Monique W. M. Jaspers, George Demiris, Julio C. Facelli, Lael C. Gatewood, Alexander Hörbst, J. Li, D. Pfeifer, Thomas Wetter
International Collaborations in Health Informatics Education: Globalizing Health and Biomedical Informatics Curricula. MedInfo (2013)
David K. Crockett, Elaine Lyon, Marc S. Williams, Scott P. Narus, Julio C. Facelli, Joyce A. Mitchell
Utility of gene-specific algorithms for predicting pathogenicity of uncertain gene variants. J. Am. Medical Informatics Assoc. 19 (2) (2012)
Ronald C. Price, Derick Huth, Jody Smith, Steve Harper, Wilson Pace, Gerald Pulver, Michael G. Kahn, Lisa M. Schilling, Julio C. Facelli
Federated Queries for Comparative Effectiveness Research: Performance Analysis. HealthGrid (2012)
Julio C. Facelli
An agenda for ultra-large-scale system research for global health informatics. SIGHIT Rec. 2 (1) (2012)
Kailah Davis, Catherine J. Staes, Jeffrey Duncan, Sean Igo, Julio C. Facelli
Identification of pneumonia and influenza deaths using the death certificate pipeline. BMC Medical Informatics Decis. Mak. 12 (2012)
Victor Maojo, Martin Fritts, Fernando Martín-Sánchez, Diana de la Iglesia, Raul E. Cachau, Miguel García-Remesal, José Crespo, Joyce A. Mitchell, Alberto Anguita, Nathan Baker, José María Barreiro, Sonia E. Benitez, Guillermo de la Calle, Julio C. Facelli, Peter Ghazal, Antoine Geissbühler, Fernando D. González Nilo, Norbert M. Graf, Pierre Grangeat, Isabel Hermosilla, Rada Hussein, Josipa Kern, Sabine Koch, Yannick Legré, Victoria López-Alonso, Guillermo López-Campos, Luciano Milanesi, Vassilis Moustakis, Cristian R. Munteanu, Paula Otero, Alejandro Pazos, David Pérez-Rey, George Potamias, Ferran Sanz, Casimir A. Kulikowski
Nanoinformatics: developing new computing applications for nanomedicine. Computing 94 (6) (2012)
Mark T. W. Ebbert, Roy R. L. Bastien, Kenneth M. Boucher, Miguel Martín, Eva Carrasco, Rosalía Caballero, Inge J. Stijleman, Philip S. Bernard, Julio C. Facelli
Characterization of uncertainty in the classification of multivariate assays: application to PAM50 centroid-based genomic predictors for breast cancer treatment plans. J. Clin. Bioinform. 1 (2011)
Nephi A. Walton, Mollie R. Poynton, Per H. Gesteland, Christopher G. Maloney, Catherine J. Staes, Julio C. Facelli
Predicting the start week of respiratory syncytial virus outbreaks using real time weather variables. BMC Medical Informatics Decis. Mak. 10 (2010)
Marta B. Ferraro, Anita M. Orendt, Julio C. Facelli
Parallel Genetic Algorithms for Crystal Structure Prediction: Successes and Failures in Predicting Bicalutamide Polymorphs. ICIC (1) (2009)
Catherine J. Staes, Wu Xu, Samuel D. LeFevre, Ronald C. Price, Scott P. Narus, Adi V. Gundlapalli, Robert T. Rolfs, Barry Nangle, Matthew H. Samore, Julio C. Facelli
A case for using grid architecture for state public health informatics: the Utah perspective. BMC Medical Informatics Decis. Mak. 9 (2009)
Seonah Kim, Anita M. Orendt, Marta B. Ferraro, Julio C. Facelli
Crystal structure prediction of flexible molecules using parallel genetic algorithms with a standard force field. J. Comput. Chem. 30 (13) (2009)
Ronald C. Price, Wayne B. Bradford, Victor E. Bazterra, Julio C. Facelli
Digital Sherpa: a set of high level tools to manage scientific applications in a computational grid. Mardi Gras Conference (2008)
Tobias Rausch, Alun Thomas, Nicola J. Camp, Lisa A. Cannon-Albright, Julio C. Facelli
A parallel genetic algorithm to discover patterns in genetic markers that indicate predisposition to multifactorial disease. Comput. Biol. Medicine 38 (7) (2008)
Thanh N. Truong, Manohar Nayak, Hung H. Huynh, Tom Cook, Priya Mahajan, Le-Thuy T. Tran, Jannu Bharath, Shrish Jain, Ha B. Pham, Chaiwoot Boonyasiriwat, Nhat Nguyen, Evan Andersen, Yong Kim, Suengkeol Choe, Jihoon Choi, Thomas E. Cheatham III, Julio C. Facelli
Computational Science and Engineering Online (CSE-Online): A Cyber-Infrastructure for Scientific Computing. J. Chem. Inf. Model. 46 (3) (2006)
Ronald C. Price, Victor E. Bazterra, Wayne B. Bradford, Julio C. Facelli
Poster reception - Digital Sherpa. SC (2006)
Victor E. Bazterra, Martin Cuma, Marta B. Ferraro, Julio C. Facelli
A general framework to understand parallel performance in heterogeneous clusters: analysis of a new adaptive parallel genetic algorithm. J. Parallel Distributed Comput. 65 (1) (2005)
David B. Jackson, Brian D. Haymore, Julio C. Facelli, Quinn Snell
Improving Cluster Utilization through Set Based Allocation Policies. ICPP Workshops (2001)
Julio C. Facelli, Jeff Nichols
How Changing High Performance Computing Technology Changes the Way in Whigh We Do Computational Chemistry. SC (1992)