Jon Pey

Publication Activity (10 Years)

Years Active: 2011-2022
Publications (10 Years): 5

Top Topics

Minimal Subsets

Saccharomyces Cerevisiae

Gene Expression

Metabolic Networks

Top Venues

Briefings Bioinform.

BMC Syst. Biol.

Publications

Asier Antoranz, María Ortiz, Jon Pey
ELIMINATOR: essentiality analysis using multisystem networks and integer programming. BMC Bioinform. 23 (1) (2022)
Luis Tobalina, Jon Pey, Francisco J. Planes
Direct calculation of minimal cut sets involving a specific reaction knock-out. Bioinform. 32 (13) (2016)
Jon Pey, Juan A. Villar, Luis Tobalina, Alberto Rezola, José Manuel García Carrasco, John E. Beasley, Francisco J. Planes
TreeEFM: calculating elementary flux modes using linear optimization in a tree-based algorithm. Bioinform. 31 (6) (2015)
Luis Tobalina, Rafael Bargiela, Jon Pey, Florian-Alexander Herbst, Iván Lores, David Rojo, Coral Barbas, Ana I. Peláez, Jesús Sánchez, Martin von Bergen, Jana Seifert, Manuel Ferrer, Francisco J. Planes
Context-specific metabolic network reconstruction of a naphthalene-degrading bacterial community guided by metaproteomic data. Bioinform. 31 (11) (2015)
Alberto Rezola, Jon Pey, Luis Tobalina, Ángel Rubio, John E. Beasley, Francisco J. Planes
Advances in network-based metabolic pathway analysis and gene expression data integration. Briefings Bioinform. 16 (2) (2015)
Jon Pey, Francisco J. Planes
Direct calculation of elementary flux modes satisfying several biological constraints in genome-scale metabolic networks. Bioinform. 30 (15) (2014)
Jon Pey, Francisco J. Planes, John E. Beasley
Refining carbon flux paths using atomic trace data. Bioinform. 30 (7) (2014)
Alberto Rezola, Jon Pey, Luis F. de Figueiredo, Adam Podhorski, Stefan Schuster, Angel Rubio, Francisco J. Planes
Selection of human tissue-specific elementary flux modes using gene expression data. Bioinform. 29 (16) (2013)
Jon Pey, Kaspar Valgepea, Angel Rubio, John E. Beasley, Francisco J. Planes
Integrating gene and protein expression data with genome-scale metabolic networks to infer functional pathways. BMC Syst. Biol. 7 (2013)
Ander Muniategui, Jon Pey, Francisco J. Planes, Angel Rubio
Joint analysis of miRNA and mRNA expression data. Briefings Bioinform. 14 (3) (2013)
Jon Pey, Luis Tobalina, Joaquín Prada J. de Cisneros, Francisco J. Planes
A network-based approach for predicting key enzymes explaining metabolite abundance alterations in a disease phenotype. BMC Syst. Biol. 7 (2013)
Jon Pey, Constantinos Theodoropoulos, Alberto Rezola, Angel Rubio, Marta Cascante, Francisco J. Planes
Do elementary flux modes combine linearly at the "atomic" level? Integrating tracer-based metabolomics data and elementary flux modes. Biosyst. 105 (2) (2011)
Alberto Rezola, Luis F. de Figueiredo, Matthias Brock, Jon Pey, Adam Podhorski, Christoph Wittmann, Stefan Schuster, Alexander Bockmayr, Francisco J. Planes
Exploring metabolic pathways in genome-scale networks via generating flux modes. Bioinform. 27 (4) (2011)