Jennifer A. Doherty

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 13

Top Topics

Text Classification

Class Imbalance

Information Extraction Systems

Top Venues

J. Biomed. Informatics

BMC Medical Informatics Decis. Mak.

Publications

Alina Peluso, Ioana Danciu, Hong-Jun Yoon, Jamaludin Mohd-Yusof, Tanmoy Bhattacharya, Adam Spannaus, Noah Schaefferkoetter, Eric B. Durbin, Xiao-Cheng Wu, Antoinette Stroup, Jennifer A. Doherty, Stephen M. Schwartz, Charles Wiggins, Linda Coyle, Lynne Penberthy, Georgia D. Tourassi, Shang Gao
Deep learning uncertainty quantification for clinical text classification. J. Biomed. Informatics 149 (2024)
Kevin De Angeli, Shang Gao, Ioana Danciu, Eric B. Durbin, Xiao-Cheng Wu, Antoinette Stroup, Jennifer A. Doherty, Stephen M. Schwartz, Charles Wiggins, Mark Damesyn, Linda Coyle, Lynne Penberthy, Georgia D. Tourassi, Hong-Jun Yoon
Class imbalance in out-of-distribution datasets: Improving the robustness of the TextCNN for the classification of rare cancer types. J. Biomed. Informatics 125 (2022)
Andrew E. Blanchard, Shang Gao, Hong-Jun Yoon, James Blair Christian, Eric B. Durbin, Xiao-Cheng Wu, Antoinette Stroup, Jennifer A. Doherty, Stephen M. Schwartz, Charles Wiggins, Linda Coyle, Lynne Penberthy, Georgia D. Tourassi
A Keyword-Enhanced Approach to Handle Class Imbalance in Clinical Text Classification. IEEE J. Biomed. Health Informatics 26 (6) (2022)
Albert Rosenberger, Viola Tozzi, Heike Bickeböller, Rayjean J. Hung, David C. Christiani, Neil E. Caporaso, Geoffrey Liu, Stig E. Bojesen, Loic Le Marchand, Demetrios Albanes, Melinda C. Aldrich, Adonina Tardon, Guillermo Fernández-Tardón, Gad Rennert, John K. Field, Mike Davies, Triantafillos Liloglou, Lambertus A. Kiemeney, Philip Lazarus, Aage Haugen, Shanbeh Zienolddiny, Stephen Lam, Matthew B. Schabath, Angeline S. Andrew, Eric J. Duell, Susanne M. Arnold, Hans Brunnström, Olle Melander, Gary E. Goodman, Chu Chen, Jennifer A. Doherty, Marion Dawn Teare, Angela Cox, Penella J. Woll, Angela Risch, Thomas R. Muley, Mikael Johansson, Paul Brennan, Maria Teresa Landi, Sanjay Shete, Christopher I. Amos
Iam hiQ - a novel pair of accuracy indices for imputed genotypes. BMC Bioinform. 23 (1) (2022)
Kevin De Angeli, Shang Gao, Mohammed M. Alawad, Hong-Jun Yoon, Noah Schaefferkoetter, Xiao-Cheng Wu, Eric B. Durbin, Jennifer A. Doherty, Antoinette Stroup, Linda Coyle, Lynne Penberthy, Georgia D. Tourassi
Deep active learning for classifying cancer pathology reports. BMC Bioinform. 22 (1) (2021)
Mohammed M. Alawad, Shang Gao, Mayanka Chandra Shekar, S. M. Shamimul Hasan, James Blair Christian, Xiao-Cheng Wu, Eric B. Durbin, Jennifer A. Doherty, Antoinette Stroup, Linda Coyle, Lynne Penberthy, Georgia D. Tourassi
Integration of Domain Knowledge using Medical Knowledge Graph Deep Learning for Cancer Phenotyping. CoRR (2021)
Shang Gao, Mohammed M. Alawad, M. Todd Young, John Gounley, Noah Schaefferkoetter, Hong-Jun Yoon, Xiao-Cheng Wu, Eric B. Durbin, Jennifer A. Doherty, Antoinette Stroup, Linda Coyle, Georgia D. Tourassi
Limitations of Transformers on Clinical Text Classification. IEEE J. Biomed. Health Informatics 25 (9) (2021)
Hong-Jun Yoon, Hilda B. Klasky, Eric B. Durbin, Xiao-Cheng Wu, Antoinette Stroup, Jennifer A. Doherty, Linda Coyle, Lynne Penberthy, Christopher Stanley, James Blair Christian, Georgia D. Tourassi
Privacy-Preserving Knowledge Transfer with Bootstrap Aggregation of Teacher Ensembles. Poly/DMAH@VLDB (2020)
Hong-Jun Yoon, Hilda B. Klasky, John P. Gounley, Mohammed M. Alawad, Shang Gao, Eric B. Durbin, Xiao-Cheng Wu, Antoinette Stroup, Jennifer A. Doherty, Linda Coyle, Lynne Penberthy, James Blair Christian, Georgia D. Tourassi
Accelerated training of bootstrap aggregation-based deep information extraction systems from cancer pathology reports. J. Biomed. Informatics 110 (2020)
Sayera Dhaubhadel, Jamaludin Mohd-Yusof, Kumkum Ganguly, Gopinath Chennupati, Sunil Thulasidasan, Nicolas W. Hengartner, Brent J. Mumphrey, Eric B. Durbin, Jennifer A. Doherty, Mireille Lemieux, Noah Schaefferkoetter, Georgia D. Tourassi, Linda Coyle, Lynne Penberthy, Benjamin McMahon, Tanmoy Bhattacharya
Why I'm not Answering: Understanding Determinants of Classification of an Abstaining Classifier for Cancer Pathology Reports. CoRR (2020)
Ellen L. Palmer, Saeed Hassanpour, John H. Higgins, Jennifer A. Doherty, Tracy Onega
Building a tobacco user registry by extracting multiple smoking behaviors from clinical notes. BMC Medical Informatics Decis. Mak. 19 (1) (2019)
Ellen L. Palmer, John H. Higgins, Saeed Hassanpour, James Sargent, Christina M. Robinson, Jennifer A. Doherty, Tracy Onega
Assessing data availability and quality within an electronic health record system through external validation against an external clinical data source. BMC Medical Informatics Decis. Mak. 19 (1) (2019)
Lia X. Harrington, Gregory P. Way, Jennifer A. Doherty, Casey S. Greene
Functional network community detection can disaggregate and filter multiple underlying pathways in enrichment analyses. PSB (2018)