Lynne Penberthy

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 15

Top Topics

Class Imbalance

Information Extraction Systems

Top Venues

J. Biomed. Informatics

Artif. Intell. Medicine

Publications

Adam Spannaus, Heidi A. Hanson, Georgia D. Tourassi, Lynne Penberthy
Topological Interpretability for Deep Learning. PASC (2024)
Alina Peluso, Ioana Danciu, Hong-Jun Yoon, Jamaludin Mohd-Yusof, Tanmoy Bhattacharya, Adam Spannaus, Noah Schaefferkoetter, Eric B. Durbin, Xiao-Cheng Wu, Antoinette Stroup, Jennifer A. Doherty, Stephen M. Schwartz, Charles Wiggins, Linda Coyle, Lynne Penberthy, Georgia D. Tourassi, Shang Gao
Deep learning uncertainty quantification for clinical text classification. J. Biomed. Informatics 149 (2024)
Adam Spannaus, Heidi A. Hanson, Lynne Penberthy, Georgia D. Tourassi
Topological Interpretability for Deep-Learning. CoRR (2023)
Kevin De Angeli, Shang Gao, Ioana Danciu, Eric B. Durbin, Xiao-Cheng Wu, Antoinette Stroup, Jennifer A. Doherty, Stephen M. Schwartz, Charles Wiggins, Mark Damesyn, Linda Coyle, Lynne Penberthy, Georgia D. Tourassi, Hong-Jun Yoon
Class imbalance in out-of-distribution datasets: Improving the robustness of the TextCNN for the classification of rare cancer types. J. Biomed. Informatics 125 (2022)
Andrew E. Blanchard, Shang Gao, Hong-Jun Yoon, James Blair Christian, Eric B. Durbin, Xiao-Cheng Wu, Antoinette Stroup, Jennifer A. Doherty, Stephen M. Schwartz, Charles Wiggins, Linda Coyle, Lynne Penberthy, Georgia D. Tourassi
A Keyword-Enhanced Approach to Handle Class Imbalance in Clinical Text Classification. IEEE J. Biomed. Health Informatics 26 (6) (2022)
Mohammed M. Alawad, Hong-Jun Yoon, Shang Gao, Brent J. Mumphrey, Xiao-Cheng Wu, Eric B. Durbin, Jong Cheol Jeong, Isaac Hands, David Rust, Linda Coyle, Lynne Penberthy, Georgia D. Tourassi
Privacy-Preserving Deep Learning NLP Models for Cancer Registries. IEEE Trans. Emerg. Top. Comput. 9 (3) (2021)
Kevin De Angeli, Shang Gao, Mohammed M. Alawad, Hong-Jun Yoon, Noah Schaefferkoetter, Xiao-Cheng Wu, Eric B. Durbin, Jennifer A. Doherty, Antoinette Stroup, Linda Coyle, Lynne Penberthy, Georgia D. Tourassi
Deep active learning for classifying cancer pathology reports. BMC Bioinform. 22 (1) (2021)
Mohammed M. Alawad, Shang Gao, Mayanka Chandra Shekar, S. M. Shamimul Hasan, James Blair Christian, Xiao-Cheng Wu, Eric B. Durbin, Jennifer A. Doherty, Antoinette Stroup, Linda Coyle, Lynne Penberthy, Georgia D. Tourassi
Integration of Domain Knowledge using Medical Knowledge Graph Deep Learning for Cancer Phenotyping. CoRR (2021)
Hong-Jun Yoon, Hilda B. Klasky, Eric B. Durbin, Xiao-Cheng Wu, Antoinette Stroup, Jennifer A. Doherty, Linda Coyle, Lynne Penberthy, Christopher Stanley, James Blair Christian, Georgia D. Tourassi
Privacy-Preserving Knowledge Transfer with Bootstrap Aggregation of Teacher Ensembles. Poly/DMAH@VLDB (2020)
Hong-Jun Yoon, Hilda B. Klasky, John P. Gounley, Mohammed M. Alawad, Shang Gao, Eric B. Durbin, Xiao-Cheng Wu, Antoinette Stroup, Jennifer A. Doherty, Linda Coyle, Lynne Penberthy, James Blair Christian, Georgia D. Tourassi
Accelerated training of bootstrap aggregation-based deep information extraction systems from cancer pathology reports. J. Biomed. Informatics 110 (2020)
Sayera Dhaubhadel, Jamaludin Mohd-Yusof, Kumkum Ganguly, Gopinath Chennupati, Sunil Thulasidasan, Nicolas W. Hengartner, Brent J. Mumphrey, Eric B. Durbin, Jennifer A. Doherty, Mireille Lemieux, Noah Schaefferkoetter, Georgia D. Tourassi, Linda Coyle, Lynne Penberthy, Benjamin McMahon, Tanmoy Bhattacharya
Why I'm not Answering: Understanding Determinants of Classification of an Abstaining Classifier for Cancer Pathology Reports. CoRR (2020)
Mohammed M. Alawad, Shang Gao, John X. Qiu, Hong-Jun Yoon, James Blair Christian, Lynne Penberthy, Brent J. Mumphrey, Xiao-Cheng Wu, Linda Coyle, Georgia D. Tourassi
Automatic extraction of cancer registry reportable information from free-text pathology reports using multitask convolutional neural networks. J. Am. Medical Informatics Assoc. 27 (1) (2020)
Shang Gao, John X. Qiu, Mohammed M. Alawad, Jacob D. Hinkle, Noah Schaefferkoetter, Hong-Jun Yoon, James Blair Christian, Paul A. Fearn, Lynne Penberthy, Xiao-Cheng Wu, Linda Coyle, Georgia D. Tourassi, Arvind Ramanathan
Classifying cancer pathology reports with hierarchical self-attention networks. Artif. Intell. Medicine 101 (2019)
Mohammed M. Alawad, Shang Gao, Xiao-Cheng Wu, Eric B. Durbin, Linda Coyle, Lynne Penberthy, Georgia D. Tourassi
Adversarial Training for Privacy-Preserving Deep Learning Model Distribution. IEEE BigData (2019)
Jessica A. Boten, Donna R. Rivera, Madhumita Myneni, Georgia D. Tourassi, Tanmoy Bhattacharya, Ana Paula de Oliveira Sales, Thomas S. Brettin, Paul A. Fearn, Lynne Penberthy
Leveraging Large-Scale Computing for Population Information Integration, Analysis, and Modeling. AMIA (2017)