Hong-Dong Li

Publication Activity (10 Years)

Years Active: 2010-2024
Publications (10 Years): 30

Top Topics

Computational Approaches

Orthogonal Projection

Alternative Splicing

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Briefings Bioinform.

Publications

Rui Guo, Xu Tian, Hanhe Lin, Stephen J. McKenna, Hong-Dong Li, Fei Guo, Jin Liu
Graph-Based Fusion of Imaging, Genetic and Clinical Data for Degenerative Disease Diagnosis. IEEE ACM Trans. Comput. Biol. Bioinform. 21 (1) (2024)
Yunpei Xu, Hong-Dong Li, Cui-Xiang Lin, Ruiqing Zheng, Yaohang Li, Jinhui Xu, Jianxin Wang
CellBRF: a feature selection method for single-cell clustering using cell balance and random forest. Bioinform. 39 (Supplement-1) (2023)
Yiwei Liu, Changhuo Yang, Hong-Dong Li, Jianxin Wang
IsoFrog: a reversible jump Markov Chain Monte Carlo feature selection-based method for predicting isoform functions. Bioinform. 39 (9) (2023)
Yingyi Liu, Hong-Dong Li, Yunpei Xu, Yi-Wei Liu, Xiaoqing Peng, Jianxin Wang
IsoCell: An Approach to Enhance Single Cell Clustering by Integrating Isoform-Level Expression Through Orthogonal Projection. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (1) (2023)
Kun Liu, Hong-Dong Li, Yaohang Li, Jun Wang, Jianxin Wang
A Comparison of Topologically Associating Domain Callers Based on Hi-C Data. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (1) (2023)
Zhenpeng Wu, Jiantao Zheng, Jiashu Liu, Cuixiang Lin, Hong-Dong Li
DeepRetention: A Deep Learning Approach for Intron Retention Detection. Big Data Min. Anal. 6 (2) (2023)
Jin Liu, Qian Bi, Ping Zhong, Hong-Dong Li, Fei Guo, Junwen Duan
Training Methods of Innovative Talents in Medical Imaging Informatics Under the Background of New Engineering. ICCSE (3) (2023)
Hong-Dong Li, Chao Deng, Xiao-Qi Zhang, Cui-Xiang Lin
A Gene Set-Integrated Approach for Predicting Disease-Associated Genes. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (6) (2023)
Jiashu Liu, Cui-Xiang Lin, Xiaoqi Zhang, Zongxuan Li, Wenkui Huang, Jin Liu, Yuanfang Guan, Hong-Dong Li
Computational approaches for detecting disease-associated alternative splicing events. Briefings Bioinform. 24 (3) (2023)
Hai Liu, Hong-Dong Li
KL-RF: Predicting disease-gene associations with model fusion. BIBM (2022)
Cui-Xiang Lin, Hong-Dong Li, Chao Deng, Yuanfang Guan, Jianxin Wang
TissueNexus: a database of human tissue functional gene networks built with a large compendium of curated RNA-seq data. Nucleic Acids Res. 50 (D1) (2022)
Cui-Xiang Lin, Hong-Dong Li, Chao Deng, Shannon Erhardt, Jun Wang, Xiaoqing Peng, Jianxin Wang
AlzCode: a platform for multiview analysis of genes related to Alzheimer's disease. Bioinform. 38 (7) (2022)
Cui-Xiang Lin, Hong-Dong Li, Chao Deng, Weisheng Liu, Shannon Erhardt, Fang-Xiang Wu, Xing-Ming Zhao, Yuanfang Guan, Jun Wang, Daifeng Wang, Bin Hu, Jianxin Wang
An integrated brain-specific network identifies genes associated with neuropathologic and clinical traits of Alzheimer's disease. Briefings Bioinform. 23 (1) (2022)
Hong-Dong Li, Cui-Xiang Lin, Jiantao Zheng
GTFtools: a software package for analyzing various features of gene models. Bioinform. 38 (20) (2022)
Jia-Hao Song, Cui-Xiang Lin, Hong-Dong Li
An Alzheimer's disease gene prediction method based on ensemble of genome-wide association study summary statistics. BIBM (2022)
Jiantao Zheng, Cuixiang Lin, Zhenpeng Wu, Hong-Dong Li
A comparison of computational approaches for intron retention detection. Big Data Min. Anal. 5 (1) (2022)
Chao Deng, Cui-Xiang Lin, Hong-Dong Li
Improving the Prediction of Disease-associated Genes by Integrating Annotated Gene Sets. BIBM (2021)
Yunpei Xu, Hong-Dong Li, Yi Pan, Feng Luo, Fang-Xiang Wu, Jianxin Wang
A Gene Rank Based Approach for Single Cell Similarity Assessment and Clustering. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (2) (2021)
Xiaoqing Peng, Hong-Dong Li, Fang-Xiang Wu, Jianxin Wang
Identifying the tissues-of-origin of circulating cell-free DNAs is a promising way in noninvasive diagnostics. Briefings Bioinform. 22 (3) (2021)
Zhao-Yu Fang, Cui-Xiang Lin, Yun-Pei Xu, Hong-Dong Li, Qing-Song Xu
REBET: a method to determine the number of cell clusters based on batch effect removal. Briefings Bioinform. 22 (6) (2021)
Hong-Dong Li, Changhuo Yang, Zhimin Zhang, Mengyun Yang, Fang-Xiang Wu, Gilbert S. Omenn, Jianxin Wang
IsoResolve: predicting splice isoform functions by integrating gene and isoform-level features with domain adaptation. Bioinform. 37 (4) (2021)
Shuo Zhang, Changhuo Yang, Hong-Dong Li, Jianxin Wang
GraphIsoFun: a graph neural network based approach for splice isoform function prediction. BIBM (2021)
Xiaoshu Zhu, Lilu Guo, Rongyuan Li, Yunpei Xu, Fang-Xiang Wu, Xiaoqing Peng, Hong-Dong Li
A network enhancement-based method for clustering of single cell RNA-seq data. Int. J. Data Min. Bioinform. 24 (4) (2020)
Hong-Dong Li, Yunpei Xu, Xiaoshu Zhu, Quan Liu, Gilbert S. Omenn, Jianxin Wang
ClusterMine: A knowledge-integrated clustering approach based on expression profiles of gene sets. J. Bioinform. Comput. Biol. 18 (3) (2020)
Zhenpeng Wu, Jiantao Zheng, Hong-Dong Li
Identification of Disease-Associated Genes Based on Differential Intron Retention. BIBM (2020)
Hong-Dong Li, Rui Guo, Junjian Li, Jianxin Wang, Yi Pan, Jin Liu
Joint Learning of Primary and Secondary Labels based on Multi-scale Representation for Alzheimer's Disease Diagnosis. BIBM (2020)
Hong-Dong Li, Tianjian Bai, Erin Sandford, Margit Burmeister, Yuanfang Guan
BaiHui: cross-species brain-specific network built with hundreds of hand-curated datasets. Bioinform. 35 (14) (2019)
Xiaoshu Zhu, Lilu Guo, Yunpei Xu, Hong-Dong Li, Xingyu Liao, Fang-Xiang Wu, Xiaoqing Peng
A Global Similarity Learning for Clustering of Single-Cell RNA-Seq Data. BIBM (2019)
Yunpei Xu, Hong-Dong Li, Yi Pan, Feng Luo, Jianxin Wang
BioRank: A Similarity Assessment Method for Single Cell Clustering. BIBM (2018)
Liangliang Liu, Jianxin Wang, Min Li, Fang-Xiang Wu, Hong-Dong Li, Ying Yu, Zhihui Fei
An interpretable model for predicting side effects of analgesics for osteoarthritis. BIBM (2017)
Hong-Dong Li, Yi-Zeng Liang, Qing-Song Xu, Dong-Sheng Cao, Bin-Bin Tan, Bai-Chuan Deng, Chen-Chen Lin
Recipe for Uncovering Predictive Genes Using Support Vector Machines Based on Model Population Analysis. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (6) (2011)
Dong-Sheng Cao, Yi-Zeng Liang, Qing-Song Xu, Hong-Dong Li, Xian Chen
A new strategy of outlier detection for QSAR/QSPR. J. Comput. Chem. 31 (3) (2010)