Hesham H. Ali

ORCID

Publication Activity (10 Years)

Years Active: 1992-2024
Publications (10 Years): 28

Top Venues

Publications

Suyeon Kim, Ishwor Thapa, Hesham H. Ali
A Robust Network Model for Studying Microbiomes in Precision Agriculture Applications. ICCS (6) (2024)
Saiteja Malisetty, Elham Rastegari, Ka-Chun Siu, Hesham H. Ali
Threshold Optimization in Constructing Comparative Network Models: A Case Study on Enhancing Laparoscopic Surgical Skill Assessment with Edge Betweenness. ICCS (6) (2024)
Amgad Abdallah Mahmoud, Nada Adel Alyan, Ahmed Elkerdawy, Shihori Tanabe, Frédéric Andrès, Andreas Pester, Hesham H. Ali
Geom-SAC: Geometric Multi-Discrete Soft Actor Critic With Applications in De Novo Drug Design. IEEE Access 12 (2024)
Rama Krishna Thelagathoti, Hesham H. Ali
A Correlation Network Model for Analyzing Mobility Data in Depression Related Studies. HEALTHINF (2023)
Nicolas Grenèche, Frédéric Andrès, Shihori Tanabe, Andreas Pester, Hesham H. Ali, Amgad A. Mahmoud, Dominique Bascle
Leverage Data Security Policies Complexity for Users: An End-to-End Storage Service Management in the Cloud Based on ABAC Attributes. MLN (2023)
Rama Krishna Thelagathoti, Hesham H. Ali
A Network Analysis Approach for the Classification of Psychiatric Disorders Using Multi-Modal Data. BIBM (2023)
Rama Krishna Thelagathoti, Saiteja Malisetty, Hesham H. Ali
Analyzing Walking and Driving Behavior Across Different Age Groups Using Population Analysis and Correlation Networks. ICCSPA (2022)
Rama Krishna Thelagathoti, Hesham H. Ali
The Comparison of Various Correlation Network Models in Studying Mobility Data for the Analysis of Depression Episodes. BIOSIGNALS (2022)
Rama Krishna Thelagathoti, Hesham H. Ali
A Data-Driven Approach for the Analysis of Behavioral Disorders With a Focus on Classification and Severity Estimation. BIBM (2022)
Yara Mahfood Haddad, Hesham H. Ali
A Dynamic Approach for Managing Heterogeneous Wireless Networks in Smart Environments. ISCC (2020)
Elham Rastegari, Donovan Orn, Hesham H. Ali
Smart Computational Approaches with Advanced Feature Selection Algorithms for Optimizing the Classification of Mobility Data in Health Informatics. BCB (2020)
Elham Rastegari, Sasan Azizian, Hesham H. Ali
Machine Learning and Similarity Network Approaches to Support Automatic Classification of Parkinson's Diseases Using Accelerometer-based Gait Analysis. HICSS (2019)
Suyeon Kim, Ishwor Thapa, Hesham H. Ali
A Graph-Theoretic Approach for Identifying Bacterial Inter-correlations and Functional Pathways in Microbiome Data. BIBM (2018)
Sean West, Hesham H. Ali
Granularity-aware fusion of biological networks for information extraction. BIBM (2017)
Julia D. Warnke-Sommer, Hesham H. Ali
Evaluation of the oral microbiome as a biomarker for early detection of human oral carcinomas. BIBM (2017)
Suyeon Kim, Ishwor Thapa, Guoqing Lu, Lifeng Zhu, Hesham H. Ali
A systems biology approach for modeling microbiomes using split graphs. BIBM (2017)
Elham Rastegari, Vivien Marmelat, Lotfollah Najjar, Dhundy Bastola, Hesham H. Ali
Using gait parameters to recognize various stages of Parkinson's disease. BIBM (2017)
Elham Rastegari, Hesham H. Ali
A Correlation Network Model Utilizing Gait Parameters for Evaluating Health Levels. BCB (2017)
Julia Warnke-Sommer, Hesham H. Ali
Graph-based Analysis of Genetic Features Associated with Mobile Elements in Crohn s Disease and Healthy Gut Microbiomes. BIOINFORMATICS (2017)
Elham Rastegari, Sasan Azizian, Hesham H. Ali
A Hierarchical Learning Model for Extracting Public Health Data from Social Media. AMCIS (2017)
Vi Dam, Hesham H. Ali
On the integration of assembly and non-assembly approaches for comparing biological sequences. BIBM (2017)
Julia D. Warnke-Sommer, Hesham H. Ali
Parallel NGS Assembly Using Distributed Assembly Graphs Enriched with Biological Knowledge. IPDPS Workshops (2017)
Yara Mahfood Haddad, Hesham H. Ali
An Evolutionary Graph-Based Approach for Managing Self-Organized IoT Networks. MobiWac (2017)
Asuda Sharma, Hesham H. Ali
Analysis of clustering algorithms in biological networks. BIBM (2017)
Sachin Pawaskar, Hesham H. Ali
A dynamic run-profile energy-aware approach for scheduling computationally intensive bioinformatics applications. HPCS (2016)
Sean West, Hesham H. Ali
Sensitivity Analysis of Granularity Levels in Complex Biological Networks. BIOSTEC (Selected Papers) (2016)
Sean West, Hesham H. Ali
On the Impact of Granularity in Extracting Knowledge from Bioinformatics Data. BIOINFORMATICS (2016)
Hesham H. Ali
Tutorials: Tutorial I: HPC and big data analytics in biomedical informatics. HPCS (2016)
Julia Warnke-Sommer, Ishwor Thapa, Hesham H. Ali
Next generation sequence assembler mis-assembly of phage genomes with terminal redundancy. BIBM (2015)
Abhishek Karpate, Hesham H. Ali
A Multi-stage Graph Approach for Efficient Clustering in Self-Organized Wireless Sensor Networks. SENSORNETS (2015)
Horacio Pérez Sánchez, Afshin Fassihi, José M. Cecilia, Hesham H. Ali, Mario Cannataro
Applications of High Performance Computing in Bioinformatics, Computational Biology and Computational Chemistry. IWBBIO (2) (2015)
Kathryn M. Cooper, Stephen Bonasera, Hesham H. Ali
Evaluating the Robustness of Correlation Network Analysis in the Aging Mouse Hypothalamus. BIOSTEC (Selected Papers) (2015)
Kathryn Dempsey Cooper, Sachin Pawaskar, Hesham H. Ali
Identification of Biologically Significant Elements Using Correlation Networks in High Performance Computing Environments. IWBBIO (2) (2015)
Kathryn M. Cooper, Prasuna Vemuri, Hesham H. Ali
On the comparison of state- and transition-based analysis of biological relevance in gene co-expression networks. BIBM (2015)
Kathryn M. Cooper, Stephen Bonasera, Hesham H. Ali
Identifying Aging Genes in the Aging Mouse Hypothalamus Using Gateway Node Analysis of Correlation Networks. BIOINFORMATICS (2015)
Jasjit K. Banwait, Hesham H. Ali, Dhundy Bastola
Optimisation of miRNA-mRNA relationship prediction using biological features. Int. J. Comput. Biol. Drug Des. 7 (1) (2014)
Hesham H. Ali, Yong Shi, Deepak Khazanchi
Special Issue on ICCS 2012. J. Comput. Sci. 5 (2) (2014)
Sean West, Hesham H. Ali
On the impact of data integration and edge enrichment in mining significant signals from biological networks. BCB (2014)
Julia Warnke, Hesham H. Ali
Focus: a new multilayer graph model for short read analysis and extraction of biologically relevant features. BCB (2014)
Hesham H. Ali, Kathryn Dempsey
Introduction to Data Analysis and Visualization in Biomedical Informatics Minitrack. HICSS (2014)
Kathryn Dempsey, Hesham H. Ali
Identifying aging-related genes in mouse hippocampus using gateway nodes. BMC Syst. Biol. 8 (2014)
Kathryn Dempsey, Hesham H. Ali
On the Robustness of the Biological Correlation Network Model. BIOINFORMATICS (2014)
Egidijus Paliulis, Hesham H. Ali
An integrated model of human Biomedical and Clinical Data structures. ICCABS (2014)
Kathryn Dempsey, Ishwor Thapa, Claudia Cortes, Zach Eriksen, Dhundy Bastola, Hesham H. Ali
On Mining Biological Signals Using Correlation Networks. ICDM Workshops (2013)
Rohan Khazanchi, Kathryn Dempsey, Ishwor Thapa, Hesham H. Ali
On Identifying and Analyzing Significant Nodes in Protein-Protein Interaction Networks. ICDM Workshops (2013)
Hesham H. Ali, Kathryn Dempsey
Introduction to Data Analysis and Visualization in Biomedical Informatics Minitrack. HICSS (2013)
Julia Warnke, Hesham H. Ali
A Tolerance Graph Approach for Domain-Specific Assembly of Next Generation Sequencing Data. ICDM Workshops (2013)
Sean West, Kathryn Dempsey, Sanjukta Bhowmick, Hesham H. Ali
Analysis of Incrementally Generated Clusters in Biological Networks Using Graph-Theoretic Filters and Ontology Enrichment. ICDM Workshops (2013)
Oliver Bonham-Carter, Hesham H. Ali, Dhundy Bastola
A base composition analysis of natural patterns for the preprocessing of metagenome sequences. BMC Bioinform. 14 (S-11) (2013)
Kathryn Dempsey, Tzu-Yi Chen, Sriram Srinivasan, Sanjukta Bhowmick, Hesham H. Ali
A structure-preserving hybrid-chordal filter for sampling in correlation networks. HPCS (2013)
Julia Warnke, Hesham H. Ali
An efficient and scalable graph modeling approach for capturing information at different levels in next generation sequencing reads. BMC Bioinform. 14 (S-11) (2013)
Dhawal Verma, Hesham H. Ali, Zhengxin Chen
Exploring Database Keyword Search for Association Studies between Genetic Variants and Diseases. ITQM (2013)
Kathryn Dempsey, Hesham H. Ali
Identifying Pathway Proteins in Networks using Convergence. BCB (2013)
Mahantesh Halappanavar, John Feo, Kathryn Dempsey, Hesham H. Ali, Sanjukta Bhowmick
A Novel Multithreaded Algorithm for Extracting Maximal Chordal Subgraphs. ICPP (2012)
Hesham H. Ali, Yong Shi, Deepak Khazanchi, Michael Lees, G. Dick van Albada, Jack J. Dongarra, Peter M. A. Sloot
Empowering Science through Computing, Preface for ICCS 2012. ICCS (2012)
Oliver Bonham-Carter, Hesham H. Ali, Dhundy Bastola
A meta-genome sequencing and assembly preprocessing algorithm inspired by restriction site base composition. BIBM Workshops (2012)
Abdelnasser Abdelaal, Hesham H. Ali
Measuring Social Capital in the Domain of Community Wireless Networks. HICSS (2012)
Julia Warnke, Sachin Pawaskar, Hesham H. Ali
An energy-aware bioinformatics application for assembling short reads in high performance computing systems. HPCS (2012)
Kathryn Dempsey, Tzu-Yi Chen, Sanjukta Bhowmick, Hesham H. Ali
On the design of advanced filters for biological networks using graph theoretic properties. BIBM (2012)
Hesham H. Ali, Laura Ricci, Italo Epicoco, Manuel Ujaldon, Jonathan Passerat-Palmbach, David R. C. Hill, Manuel Villén-Altamirano
HPCS 2012 tutorials: Tutorial I: High performance computing in biomedical informatics. HPCS (2012)
Kathryn Dempsey, Kanimathi Duraisamy, Sanjukta Bhowmick, Hesham H. Ali
The Development of Parallel Adaptive Sampling Algorithms for Analyzing Biological Networks. IPDPS Workshops (2012)
Kathryn Dempsey, Sanjukta Bhowmick, Hesham H. Ali
Function-preserving Filters for Sampling in Biological Networks. ICCS (2012)
Kathryn Dempsey, Ishwor Thapa, Dhundy Bastola, Hesham H. Ali
Functional identification in correlation networks using gene ontology edge annotation. Int. J. Comput. Biol. Drug Des. 5 (3/4) (2012)
Julia Warnke, Hesham H. Ali
An efficient overlap graph coarsening approach for modeling short reads. BIBM Workshops (2012)
Jasjit K. Banwait, Hesham H. Ali, Dhundy Bastola
Enriching miRNA binding site specificity with sequence profile based filtering of 3'-UTR region of mRNA. BIBM Workshops (2012)
Abdelnasser Abdelaal, Hesham H. Ali
Human Capital in the Domain of Community Wireless Networks. HICSS (2012)
Kathryn Dempsey, Kanimathi Duraisamy, Hesham H. Ali, Sanjukta Bhowmick
A Parallel Graph Sampling Algorithm for Analyzing Gene Correlation Networks. ICCS (2011)
Kanimathi Duraisamy, Kathryn Dempsey, Hesham H. Ali, Sanjukta Bhowmick
A noise reducing sampling approach for uncovering critical properties in large scale biological networks. HPCS (2011)
Kathryn Dempsey, Hesham H. Ali
Evaluation of essential genes in correlation networks using measures of centrality. BIBM Workshops (2011)
Kathryn Dempsey, Stephen Bonasera, Dhundy Bastola, Hesham H. Ali
A Novel Correlation Networks Approach for the Identification of Gene Targets. HICSS (2011)
Kathryn Dempsey, Ishwor Thapa, Dhundy Bastola, Hesham H. Ali
Identifying modular function via edge annotation in gene correlation networks using Gene Ontology search. BIBM Workshops (2011)
Abhishek Karpate, Hesham H. Ali
An energy-aware genetic algorithm for managing self-organized wireless sensor networks. Wireless Days (2011)
Rajib Sengupta, Dhundy Bastola, Hesham H. Ali
Classification and Identification of fungal Sequences Using Characteristic restriction endonuclease Cut Order. J. Bioinform. Comput. Biol. 8 (2) (2010)
Sachin Pawaskar, Hesham H. Ali
A dynamic energy-aware model for scheduling computationally intensive bioinformatics applications. HPCS (2010)
Kathryn Dempsey, Benjamin Currall, Richard Hallworth, Hesham H. Ali
An intelligent data-centric approach toward identification of conserved motifs in protein sequences. BCB (2010)
Abdelnasser Abdelaal, Hesham H. Ali
Analyzing community contributions to the development of community wireless networks. ECIS (2009)
Nam Pham, Jong-Hoon Youn, Hesham H. Ali
Improving Network Throughput Using a Fixed Scheduling Scheme and a P-Persistent Approach. NTMS (2009)
Abdelnasser Abdelaal, Hesham H. Ali, Deepak Khazanchi
The Role of Social Capital in the Creation of Community Wireless Networks. HICSS (2009)
Huimin Geng, Wing C. Chan, Hesham H. Ali
A Computational Method to Predict DNA Copy Number Alterations from Gene Expression Data in Tumor Cases. HICSS (2009)
Jong-Hoon Youn, Hesham H. Ali, Hamid Sharif, Biplav Chhetri
RFID-based information system for preventing medical errors. MobiQuitous (2009)
Abdelnasser Abdelaal, Hesham H. Ali
Community wireless networks: Emerging wireless commons for digital inclusion. ISTAS (2009)
Huimin Geng, Xutao Deng, Hesham H. Ali
Message Passing Clustering (MPC): a knowledge-based framework for clustering under biological constraints. Int. J. Data Min. Bioinform. 2 (2) (2008)
Xutao Deng, Huimin Geng, Hesham H. Ali
A Hidden Markov Model approach to predicting yeast gene function from sequential gene expression data. Int. J. Bioinform. Res. Appl. 4 (3) (2008)
Abdelnasser Abdelaal, Hesham H. Ali
A Content-Based Pricing Model for Municipal and Community Wireless Networks. AMCIS (2008)
Daniel Quest, Kathryn Dempsey, Mohammad Shafiullah, Dhundy Bastola, Hesham H. Ali
MTAP: The Motif Tool Assessment Platform. BMC Bioinform. 9 (S-9) (2008)
Abdelnasser Abdelaal, Hesham H. Ali
A Graph Theoretic Approach for Analysis and Design of Community Wireless Networks. AMCIS (2008)
Huimin Geng, Hesham H. Ali, Wing C. Chan
A Hidden Markov Model Approach for Prediction of Genomic Alterations from Gene Expression Profiling. ISBRA (2008)
Nitin Sharma, Jong-Hoon Youn, Neeraj Shrestha, Hesham H. Ali
Direction Finding Signage System using RFID for Healthcare Applications. BMEI (1) (2008)
Jason Uher, Dillon Sadofsky, Jong-Hoon Youn, Hesham H. Ali, Hamid Sharif, Jitender S. Deogun, Steven H. Hinrichs
I2MeDS: Intelligent Integrated Medical Data System. BMEI (1) (2008)
Daniel Quest, Kathryn Dempsey, Mohammad Shafiullah, Dhundy Bastola, Hesham H. Ali
A parallel architecture for regulatory motif algorithm assessment. IPDPS (2008)
Hesham H. Ali
Self Ranking and Evaluation Approach for Focused Crawler Based on Multi-Agent System. Int. Arab J. Inf. Technol. 5 (2) (2008)
Dhundy Bastola, Sarfraz H. Chandio, Peter Iwen, Steven H. Hinrichs, Hesham H. Ali
RFLP-WAVE Analysis for Rapid Identification of Medically Important Fungi. HICSS (2008)
Syed I. Nayer, Hesham H. Ali
A Dynamic Energy-Aware Algorithm for Self-Optimizing Wireless Sensor Networks. IWSOS (2008)
Hesham H. Ali, Simon Sherman
Minitrack: Advanced Data Management Tools for Biomedical Informatics. HICSS (2007)
Sudha Mudundi, Hesham H. Ali
A Robust Scalable Cluster-Based Multi-hop Routing Protocol for Wireless Sensor Networks. ISPA (2007)
Huimin Geng, Javeed Iqbal, Xutao Deng, Wing C. Chan, Hesham H. Ali
Virtual CGH: Prediction of Novel Regions of Chromosomal Alterations in Tumor from Gene Expression Profiling. HICSS (2007)
Jong-Hoon Youn, Hesham H. Ali, Hamid Sharif, Jitender S. Deogun, Jason Uher, Steven H. Hinrichs
WLAN-Based Real-Time Asset Tracking System in Healthcare Environments. WiMob (2007)
Sachin Pawaskar, Hesham H. Ali
Dynamic energy aware task scheduling using run-queue peek. Parallel and Distributed Computing and Networks (2007)
Xiaolu Huang, Hesham H. Ali
Reducing Folding Scenario Candidates in Pseudoknots Detection Using PLMM_DPSS Algorithm Integrated With Energy Filters. BIBE (2007)
Hong Zhou, Lu Jin, Zhongwei Zhang, Hesham H. Ali, Chulho Won
Applications and Performances of Extended TTDDs in Large-Scale Wireless Sensor Networks. MSN (2007)

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Publication Activity (10 Years)

Top Topics

Top Venues

Hesham H. Ali