Harmen J. Bussemaker

Publication Activity (10 Years)

Years Active: 2000-2008
Publications (10 Years): 0

Publications

Barrett C. Foat, Ronald G. Tepper, Harmen J. Bussemaker
-acting factors. Nucleic Acids Res. 36 (Database-Issue) (2008)
Lucas D. Ward, Harmen J. Bussemaker
Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences. ISMB (2008)
Harmen J. Bussemaker, Lucas D. Ward, André Boorsma
Dissecting complex transcriptional responses using pathway-level scores based on prior information. BMC Bioinform. 8 (S-6) (2007)
Barrett C. Foat, Alexandre V. Morozov, Harmen J. Bussemaker
Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE. ISMB (Supplement of Bioinformatics) (2006)
André Boorsma, Barrett C. Foat, Daniel J. Vis, Frans Klis, Harmen J. Bussemaker
T-profiler: scoring the activity of predefined groups of genes using gene expression data. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Feng Gao, Barrett C. Foat, Harmen J. Bussemaker
Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data. BMC Bioinform. 5 (2004)
Crispin Roven, Harmen J. Bussemaker
REDUCE: an online tool for inferring cis-regulatory elements and transcriptional module activities from microarray data. Nucleic Acids Res. 31 (13) (2003)
Harmen J. Bussemaker, Hao Li, Eric D. Siggia
Regulatory element detection using correlation with expression (abstract only). RECOMB (2001)
Harmen J. Bussemaker, Hao Li, Eric D. Siggia
Regulatory Element Detection Using a Probabilistic Segmentation Model. ISMB (2000)