Haichun Yang

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 45

Top Topics

Demographic Data

Survival Prediction

Image Segmentation

Top Venues

IEEE Trans. Medical Imaging

DGM4MICCAI/DALI@MICCAI

Publications

Can Cui, Ruining Deng, Junlin Guo, Quan Liu, Tianyuan Yao, Haichun Yang, Yuankai Huo
PFPs: Prompt-guided Flexible Pathological Segmentation for Diverse Potential Outcomes Using Large Vision and Language Models. CoRR (2024)
Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Jialin Yue, Juming Xiong, Lining Yu, Yifei Wu, Mengmeng Yin, Yu Wang, Shilin Zhao, Yucheng Tang, Haichun Yang, Yuankai Huo
PrPSeg: Universal Proposition Learning for Panoramic Renal Pathology Segmentation. CoRR (2024)
Yucheng Tang, Yufan He, Vishwesh Nath, Pengfei Guo, Ruining Deng, Tianyuan Yao, Quan Liu, Can Cui, Mengmeng Yin, Ziyue Xu, Holger Roth, Daguang Xu, Haichun Yang, Yuankai Huo
HoloHisto: End-to-end Gigapixel WSI Segmentation with 4K Resolution Sequential Tokenization. CoRR (2024)
Lining Yu, Mengmeng Yin, Ruining Deng, Quan Liu, Tianyuan Yao, Can Cui, Yu Wang, Yaohong Wang, Shilin Zhao, Haichun Yang, Yuankai Huo
Adapting Mouse Pathological Model to Human Glomerular Lesion Segmentation. CoRR (2024)
Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Juming Xiong, Shunxing Bao, Hao Li, Mengmeng Yin, Yu Wang, Shilin Zhao, Yucheng Tang, Haichun Yang, Yuankai Huo
HATs: Hierarchical Adaptive Taxonomy Segmentation for Panoramic Pathology Image Analysis. CoRR (2024)
Juming Xiong, Ethan H. Nguyen, Yilin Liu, Ruining Deng, Regina N. Tyree, Hernan Correa, Girish Hiremath, Yaohong Wang, Haichun Yang, Agnes B. Fogo, Yuankai Huo
Circle Representation for Medical Instance Object Segmentation. CoRR (2024)
Jialin Yue, Tianyuan Yao, Ruining Deng, Quan Liu, Juming Xiong, Haichun Yang, Yuankai Huo
Weighted Circle Fusion: Ensembling Circle Representation from Different Object Detection Results. CoRR (2024)
Muhao Liu, Chenyang Qi, Shunxing Bao, Quan Liu, Ruining Deng, Yu Wang, Shilin Zhao, Haichun Yang, Yuankai Huo
Evaluation Kidney Layer Segmentation on Whole Slide Imaging using Convolutional Neural Networks and Transformers. CoRR (2023)
Xueyuan Li, Ruining Deng, Yucheng Tang, Shunxing Bao, Haichun Yang, Yuankai Huo
Leverage Weakly Annotation to Pixel-wise Annotation via Zero-shot Segment Anything Model for Molecular-empowered Learning. CoRR (2023)
Jiayuan Chen, Yu Wang, Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Yilin Liu, Jianyong Zhong, Agnes B. Fogo, Haichun Yang, Shilin Zhao, Yuankai Huo
Spatial Pathomics Toolkit for Quantitative Analysis of Podocyte Nuclei with Histology and Spatial Transcriptomics Data in Renal Pathology. CoRR (2023)
Haoju Leng, Ruining Deng, Shunxing Bao, Dazheng Fang, Bryan A. Millis, Yucheng Tang, Haichun Yang, Xiao Wang, Yifan Peng, Lipeng Wan, Yuankai Huo
High-performance Data Management for Whole Slide Image Analysis in Digital Pathology. CoRR (2023)
Ruining Deng, Yanwei Li, Peize Li, Jiacheng Wang, Lucas W. Remedios, Saydolimkhon Agzamkhodjaev, Zuhayr Asad, Quan Liu, Can Cui, Yaohong Wang, Yihan Wang, Yucheng Tang, Haichun Yang, Yuankai Huo
Democratizing Pathological Image Segmentation with Lay Annotators via Molecular-Empowered Learning. MICCAI (6) (2023)
Haoju Leng, Ruining Deng, Zuhayr Asad, R. Michael Womick, Haichun Yang, Lipeng Wan, Yuankai Huo
An Accelerated Pipeline for Multi-label Renal Pathology Image Segmentation at the Whole Slide Image Level. CoRR (2023)
Ruining Deng, Yanwei Li, Peize Li, Jiacheng Wang, Lucas W. Remedios, Saydolimkhon Agzamkhodjaev, Zuhayr Asad, Quan Liu, Can Cui, Yucheng Tang, Haichun Yang, Yuankai Huo
Democratizing Pathological Image Segmentation with Lay Annotators via Molecular-empowered Learning. CoRR (2023)
Ruining Deng, Can Cui, Quan Liu, Tianyuan Yao, Lucas W. Remedios, Shunxing Bao, Bennett A. Landman, Lee E. Wheless, Lori A. Coburn, Keith T. Wilson, Yaohong Wang, Shilin Zhao, Agnes B. Fogo, Haichun Yang, Yucheng Tang, Yuankai Huo
Segment Anything Model (SAM) for Digital Pathology: Assess Zero-shot Segmentation on Whole Slide Imaging. CoRR (2023)
Franklin Hu, Ruining Deng, Shunxing Bao, Haichun Yang, Yuankai Huo
Multi-scale Multi-site Renal Microvascular Structures Segmentation for Whole Slide Imaging in Renal Pathology. CoRR (2023)
Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Jun Long, Zuhayr Asad, R. Michael Womick, Zheyu Zhu, Agnes B. Fogo, Shilin Zhao, Haichun Yang, Yuankai Huo
Omni-Seg: A Scale-Aware Dynamic Network for Renal Pathological Image Segmentation. IEEE Trans. Biomed. Eng. 70 (9) (2023)
Tianyuan Yao, Chang Qu, Jun Long, Quan Liu, Ruining Deng, Yuanhan Tian, Jiachen Xu, Aadarsh Jha, Zuhayr Asad, Shunxing Bao, Mengyang Zhao, Agnes B. Fogo, Bennett A. Landman, Haichun Yang, Catie Chang, Yuankai Huo
Compound Figure Separation of Biomedical Images: Mining Large Datasets for Self-supervised Learning. CoRR (2022)
Ethan H. Nguyen, Haichun Yang, Zuhayr Asad, Ruining Deng, Agnes B. Fogo, Yuankai Huo
CircleSnake: Instance Segmentation with Circle Representation. MLMI@MICCAI (2022)
Ethan H. Nguyen, Haichun Yang, Ruining Deng, Yuzhe Lu, Zheyu Zhu, Joseph T. Roland, Le Lu, Bennett A. Landman, Agnes B. Fogo, Yuankai Huo
Circle Representation for Medical Object Detection. IEEE Trans. Medical Imaging 41 (3) (2022)
Can Cui, Han Liu, Quan Liu, Ruining Deng, Zuhayr Asad, Yaohong Wang, Shilin Zhao, Haichun Yang, Bennett A. Landman, Yuankai Huo
Survival Prediction of Brain Cancer with Incomplete Radiology, Pathology, Genomics, and Demographic Data. CoRR (2022)
Tianyuan Yao, Yuzhe Lu, Jun Long, Aadarsh Jha, Zheyu Zhu, Zuhayr Asad, Haichun Yang, Agnes B. Fogo, Yuankai Huo
Glo-In-One: Holistic Glomerular Detection, Segmentation, and Lesion Characterization with Large-scale Web Image Mining. CoRR (2022)
Ethan H. Nguyen, Haichun Yang, Zuhayr Asad, Ruining Deng, Agnes B. Fogo, Yuankai Huo
CircleSnake: Instance Segmentation with Circle Representation. CoRR (2022)
Can Cui, Haichun Yang, Yaohong Wang, Shilin Zhao, Zuhayr Asad, Lori A. Coburn, Keith T. Wilson, Bennett A. Landman, Yuankai Huo
Deep Multi-modal Fusion of Image and Non-image Data in Disease Diagnosis and Prognosis: A Review. CoRR (2022)
Can Cui, Han Liu, Quan Liu, Ruining Deng, Zuhayr Asad, Yaohong Wang, Shilin Zhao, Haichun Yang, Bennett A. Landman, Yuankai Huo
Survival Prediction of Brain Cancer with Incomplete Radiology, Pathology, Genomic, and Demographic Data. MICCAI (5) (2022)
Ruining Deng, Quan Liu, Can Cui, Tianyuan Yao, Jun Long, Zuhayr Asad, R. Michael Womick, Zheyu Zhu, Agnes B. Fogo, Shilin Zhao, Haichun Yang, Yuankai Huo
Omni-Seg+: A Scale-aware Dynamic Network for Pathological Image Segmentation. CoRR (2022)
Yuzhe Lu, Haichun Yang, Zuhayr Asad, Zheyu Zhu, Tianyuan Yao, Jiachen Xu, Agnes B. Fogo, Yuankai Huo
Holistic Fine-grained GGS Characterization: From Detection to Unbalanced Classification. CoRR (2022)
Ruining Deng, Quan Liu, Can Cui, Zuhayr Asad, Haichun Yang, Yuankai Huo
Single Dynamic Network for Multi-label Renal Pathology Image Segmentation. MIDL (2022)
Ruining Deng, Haichun Yang, Aadarsh Jha, Yuzhe Lu, Peng Chu, Agnes B. Fogo, Yuankai Huo
Map3D: Registration-Based Multi-Object Tracking on 3D Serial Whole Slide Images. IEEE Trans. Medical Imaging 40 (7) (2021)
Yuzhe Lu, Haichun Yang, Zheyu Zhu, Ruining Deng, Agnes B. Fogo, Yuankai Huo
Improve Global Glomerulosclerosis Classification with Imbalanced Data using CircleMix Augmentation. CoRR (2021)
Ethan H. Nguyen, Haichun Yang, Ruining Deng, Yuzhe Lu, Zheyu Zhu, Joseph T. Roland, Le Lu, Bennett A. Landman, Agnes B. Fogo, Yuankai Huo
Circle Representation for Medical Object Detection. CoRR (2021)
Quan Liu, Peter C. Louis, Yuzhe Lu, Aadarsh Jha, Mengyang Zhao, Ruining Deng, Tianyuan Yao, Joseph T. Roland, Haichun Yang, Shilin Zhao, Lee E. Wheless, Yuankai Huo
SimTriplet: Simple Triplet Representation Learning with a Single GPU. CoRR (2021)
Xing Li, Haichun Yang, Jiaxin He, Aadarsh Jha, Agnes B. Fogo, Lee E. Wheless, Shilin Zhao, Yuankai Huo
Beds: Bagging Ensemble Deep Segmentation For Nucleus Segmentation With Testing Stage Stain Augmentation. ISBI (2021)
Yuzhe Lu, Haichun Yang, Zheyu Zhu, Ruining Deng, Agnes B. Fogo, Yuankai Huo
Improve global glomerulosclerosis classification with imbalanced data using CircleMix augmentation. Medical Imaging: Image Processing (2021)
Tianyuan Yao, Chang Qu, Quan Liu, Ruining Deng, Yuanhan Tian, Jiachen Xu, Aadarsh Jha, Shunxing Bao, Mengyang Zhao, Agnes B. Fogo, Bennett A. Landman, Catie Chang, Haichun Yang, Yuankai Huo
Compound Figure Separation of Biomedical Images with Side Loss. DGM4MICCAI/DALI@MICCAI (2021)
Xing Li, Haichun Yang, Jiaxin He, Aadarsh Jha, Agnes B. Fogo, Lee E. Wheless, Shilin Zhao, Yuankai Huo
BEDS: Bagging ensemble deep segmentation for nucleus segmentation with testing stage stain augmentation. CoRR (2021)
Quan Liu, Peter C. Louis, Yuzhe Lu, Aadarsh Jha, Mengyang Zhao, Ruining Deng, Tianyuan Yao, Joseph T. Roland, Haichun Yang, Shilin Zhao, Lee E. Wheless, Yuankai Huo
SimTriplet: Simple Triplet Representation Learning with a Single GPU. MICCAI (2) (2021)
Tianyuan Yao, Chang Qu, Quan Liu, Ruining Deng, Yuanhan Tian, Jiachen Xu, Aadarsh Jha, Shunxing Bao, Mengyang Zhao, Agnes B. Fogo, Bennett A. Landman, Catie Chang, Haichun Yang, Yuankai Huo
Compound Figure Separation of Biomedical Images with Side Loss. CoRR (2021)
Ruining Deng, Quan Liu, Can Cui, Zuhayr Asad, Haichun Yang, Yuankai Huo
Omni-Seg: A Single Dynamic Network for Multi-label Renal Pathology Image Segmentation using Partially Labeled Data. CoRR (2021)
Aadarsh Jha, Haichun Yang, Ruining Deng, Meghan E. Kapp, Agnes B. Fogo, Yuankai Huo
Instance Segmentation for Whole Slide Imaging: End-to-End or Detect-Then-Segment. CoRR (2020)
Ruining Deng, Haichun Yang, Aadarsh Jha, Yuzhe Lu, Peng Chu, Agnes B. Fogo, Yuankai Huo
Map3D: Registration Based Multi-Object Tracking on 3D Serial Whole Slide Images. CoRR (2020)
Haichun Yang, Ruining Deng, Yuzhe Lu, Zheyu Zhu, Ye Chen, Joseph T. Roland, Le Lu, Bennett A. Landman, Agnes B. Fogo, Yuankai Huo
CircleNet: Anchor-free Detection with Circle Representation. CoRR (2020)
Zheyu Zhu, Yuzhe Lu, Ruining Deng, Haichun Yang, Agnes B. Fogo, Yuankai Huo
EasierPath: An Open-Source Tool for Human-in-the-Loop Deep Learning of Renal Pathology. iMIMIC/MIL3ID/LABELS@MICCAI (2020)
Haichun Yang, Ruining Deng, Yuzhe Lu, Zheyu Zhu, Ye Chen, Joseph T. Roland, Le Lu, Bennett A. Landman, Agnes B. Fogo, Yuankai Huo
CircleNet: Anchor-Free Glomerulus Detection with Circle Representation. MICCAI (4) (2020)
Zheyu Zhu, Yuzhe Lu, Ruining Deng, Haichun Yang, Agnes B. Fogo, Yuankai Huo
EasierPath: An Open-source Tool for Human-in-the-loop Deep Learning of Renal Pathology. CoRR (2020)