Gui-Jun Zhang

Publication Activity (10 Years)

Years Active: 2007-2024
Publications (10 Years): 29

Top Topics

Differential Evolution

Protein Structure

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

J. Chem. Inf. Model.

Quantum Inf. Process.

Publications

Chunxiang Peng, Fang Liang, Yuhao Xia, Kai-Long Zhao, Minghua Hou, Gui-Jun Zhang
Recent Advances and Challenges in Protein Structure Prediction. J. Chem. Inf. Model. 64 (1) (2024)
Jun Hu, Yu-Xuan Tang, Yu Zhou, Zhe Li, Bing Rao, Gui-Jun Zhang
Improving DNA 6mA Site Prediction via Integrating Bidirectional Long Short-Term Memory, Convolutional Neural Network, and Self-Attention Mechanism. J. Chem. Inf. Model. 63 (17) (2023)
Hai-Tao Zhu, Yuhao Xia, Gui-Jun Zhang
E2EDA: Protein Domain Assembly Based on End-to-End Deep Learning. J. Chem. Inf. Model. 63 (20) (2023)
Jun Liu, Dong Liu, Gui-Jun Zhang
DeepUMQA3: a web server for accurate assessment of interface residue accuracy in protein complexes. Bioinform. 39 (10) (2023)
Lai-Zhen Luo, Yu Xia, Gui-Jun Zhang
with d an odd prime power. Quantum Inf. Process. 22 (11) (2023)
Zhong-Ze Yu, Chunxiang Peng, Jun Liu, Biao Zhang, Xiao-Gen Zhou, Gui-Jun Zhang
DomBpred: Protein Domain Boundary Prediction Based on Domain-Residue Clustering Using Inter-Residue Distance. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (2) (2023)
Jun Hu, Wen-Wu Zeng, Ning-Xin Jia, Muhammad Arif, Dong-Jun Yu, Gui-Jun Zhang
Improving DNA-Binding Protein Prediction Using Three-Part Sequence-Order Feature Extraction and a Deep Neural Network Algorithm. J. Chem. Inf. Model. 63 (3) (2023)
Biao Zhang, Dong Liu, Yang Zhang, Hong-Bin Shen, Gui-Jun Zhang
Accurate flexible refinement for atomic-level protein structure using cryo-EM density maps and deep learning. Briefings Bioinform. 23 (2) (2022)
Sai-Sai Guo, Jun Liu, Xiao-Gen Zhou, Gui-Jun Zhang
DeepUMQA: ultrafast shape recognition-based protein model quality assessment using deep learning. Bioinform. 38 (7) (2022)
Liang Rao, Ning-Xin Jia, Jun Hu, Dong-Jun Yu, Gui-Jun Zhang
ATPdock: a template-based method for ATP-specific protein-ligand docking. Bioinform. 38 (2) (2022)
Jun Hu, Yan-Song Bai, Lin-Lin Zheng, Ning-Xin Jia, Dong-Jun Yu, Gui-Jun Zhang
Protein-DNA Binding Residue Prediction via Bagging Strategy and Sequence-Based Cube-Format Feature. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (6) (2022)
Chunxiang Peng, Xiao-Gen Zhou, Yuhao Xia, Jun Liu, Minghua Hou, Gui-Jun Zhang
Structural analogue-based protein structure domain assembly assisted by deep learning. Bioinform. 38 (19) (2022)
Chunxiang Peng, Xiao-Gen Zhou, Gui-Jun Zhang
De novo Protein Structure Prediction by Coupling Contact With Distance Profile. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (1) (2022)
Kai-Long Zhao, Jun Liu, Xiao-Gen Zhou, Jianzhong Su, Yang Zhang, Gui-Jun Zhang
MMpred: a distance-assisted multimodal conformation sampling for de novo protein structure prediction. Bioinform. 37 (23) (2021)
Jun Liu, Kai-Long Zhao, Guang-Xing He, Liu-Jing Wang, Xiao-Gen Zhou, Gui-Jun Zhang
A de novo protein structure prediction by iterative partition sampling, topology adjustment and residue-level distance deviation optimization. Bioinform. 38 (1) (2021)
Gui-Jun Zhang, Tengyu Xie, Xiao-Gen Zhou, Liu-Jing Wang, Jun Hu
Protein Structure Prediction Using Population-Based Algorithm Guided by Information Entropy. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (2) (2021)
Jun Hu, Liang Rao, Yi-Heng Zhu, Gui-Jun Zhang, Dong-Jun Yu
TargetDBP+: Enhancing the Performance of Identifying DNA-Binding Proteins via Weighted Convolutional Features. J. Chem. Inf. Model. 61 (1) (2021)
Yuhao Xia, Chunxiang Peng, Xiao-Gen Zhou, Gui-Jun Zhang
A sequential niche multimodal conformational sampling algorithm for protein structure prediction. Bioinform. 37 (23) (2021)
Xiaogen Zhou, Chunxiang Peng, Jun Liu, Yang Zhang, Gui-Jun Zhang
Underestimation-Assisted Global-Local Cooperative Differential Evolution and the Application to Protein Structure Prediction. IEEE Trans. Evol. Comput. 24 (3) (2020)
Gui-Jun Zhang, Xiao-Qi Wang, Lai-Fa Ma, Liu-Jing Wang, Jun Hu, Xiao-Gen Zhou
Two-Stage Distance Feature-based Optimization Algorithm for De novo Protein Structure Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (6) (2020)
Jun Liu, Xiao-Gen Zhou, Yang Zhang, Gui-Jun Zhang
CGLFold: a contact-assisted de novo protein structure prediction using global exploration and loop perturbation sampling algorithm. Bioinform. 36 (8) (2020)
Gui-Jun Zhang, Lai-Fa Ma, Xiao-Qi Wang, Xiaogen Zhou
Secondary Structure and Contact Guided Differential Evolution for Protein Structure Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (3) (2020)
Jun Hu, Xiaogen Zhou, Yi-Heng Zhu, Dong-Jun Yu, Gui-Jun Zhang
TargetDBP: Accurate DNA-Binding Protein Prediction Via Sequence-Based Multi-View Feature Learning. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (4) (2020)
Xiaogen Zhou, Gui-Jun Zhang
Differential Evolution With Underestimation-Based Multimutation Strategy. IEEE Trans. Cybern. 49 (4) (2019)
Gui-Jun Zhang, Yuan-Hong Tao, Yi-Fan Han, Xin-Lei Yong, Shao-Ming Fei
Unextendible maximally entangled bases in \({\mathbb {C}}^{pd}\otimes {\mathbb {C}}^{qd}\). Quantum Inf. Process. 17 (11) (2018)
Yi-Fan Han, Gui-Jun Zhang, Xin-Lei Yong, Lingshan Xu, Yuan-Hong Tao
Mutually unbiased special entangled bases with Schmidt number 2 in \({\mathbb {C}}^3 \otimes {\mathbb {C}}^{4k}\). Quantum Inf. Process. 17 (3) (2018)
Xiaogen Zhou, Gui-Jun Zhang
Abstract Convex Underestimation Assisted Multistage Differential Evolution. IEEE Trans. Cybern. 47 (9) (2017)
Gui-Jun Zhang, Xiaogen Zhou, Xufeng Yu, Xiao-hu Hao, Li Yu
Enhancing Protein Conformational Space Sampling Using Distance Profile-Guided Differential Evolution. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (6) (2017)
Xiaogen Zhou, Gui-Jun Zhang, Xiao-hu Hao, Li Yu, Dong-wei Xu
Differential evolution with multi-stage strategies for global optimization. CEC (2016)
Yuanjing Feng, Li Yu, Gui-Jun Zhang
Ant colony pattern search algorithms for unconstrained and bound constrained optimization. Appl. Math. Comput. 191 (1) (2007)