Edmon Begoli

Publication Activity (10 Years)

Years Active: 2012-2023
Publications (10 Years): 35

Top Topics

Stream Processing Systems

Clinical Practice Guidelines

Reading Comprehension

Heterogeneous Data

Top Venues

Publications

Edmon Begoli
Poster: StreamToxWatch - Data Poisoning Detector in Distributed, Event-based Environments. DEBS (2023)
Farhin Farhad Riya, Shahinul Hoque, Md. Saif Hassan Onim, Edward Michaud, Edmon Begoli
Effects of Real-Life Traffic Sign Alteration on YOLOv7- an Object Recognition Model. CoRR (2023)
Maria Mahbub, Ian Goethert, Ioana Danciu, Kathryn Knight, Sudarshan Srinivasan, Suzanne Tamang, Karine Rozenberg-Ben-Dror, Hugo Solares, Susana B. Martins, Edmon Begoli, Gregory D. Peterson
Question-Answering System Extracts Information on Injection Drug Use from Clinical Progress Notes. CoRR (2023)
Maria Mahbub, Edmon Begoli, Susana Martins, Alina Peluso, Suzanne Tamang, Gregory D. Peterson
cpgQA: A Benchmark Dataset for Machine Reading Comprehension Tasks on Clinical Practice Guidelines and a Case Study Using Transfer Learning. IEEE Access 11 (2023)
Jun Wen, Xiang Zhang, Everett Neil Rush, Vidul Ayakulangara Panickan, Xingyu Li, Tianrun Cai, Doudou Zhou, Yuk-Lam Ho, Lauren Costa, Edmon Begoli, Chuan Hong, J. Michael Gaziano, Kelly Cho, Junwei Lu, Katherine P. Liao, Marinka Zitnik, Tianxi Cai
Multimodal representation learning for predicting molecule-disease relations. Bioinform. 39 (2) (2023)
Edmon Begoli, Edmon Meyer, Pablo Moriano, Sean Oesch
Poster: Cognitive Cyber - Dynamic, Adaptive Cyber Defense Systems for Massively Distributed, Autonomous, and Ad-hoc Computing Environments. DEBS (2023)
Edmon Begoli, Sudarshan Srinivasan, Maria Mahbub
Improving Efficiency and Robustness of Transformer-based Information Retrieval Systems. SIGIR (2022)
Maria Mahbub, Sudarshan Srinivasan, Edmon Begoli, Gregory D. Peterson
BioADAPT-MRC: adversarial learning-based domain adaptation improves biomedical machine reading comprehension task. Bioinform. 38 (18) (2022)
Maria Mahbub, Sudarshan Srinivasan, Edmon Begoli, Gregory D. Peterson
BioADAPT-MRC: Adversarial Learning-based Domain Adaptation Improves Biomedical Machine Reading Comprehension Task. CoRR (2022)
Jeremiah Duncan, Fabian Fallas, Chris Gropp, Emily Herron, Maria Mahbub, Paula Olaya, Eduardo Ponce, Tabitha K. Samuel, Daniel Schultz, Sudarshan Srinivasan, Maofeng Tang, Viktor Zenkov, Quan Zhou, Edmon Begoli
The Sensitivity of Word Embeddings-based Author Detection Models to Semantic-preserving Adversarial Perturbations. CoRR (2021)
Chuan Hong, Everett Neil Rush, Molei Liu, Doudou Zhou, Jiehuan Sun, Aaron Sonabend W., Victor M. Castro, Petra Schubert, Vidul Ayakulangara Panickan, Tianrun Cai, Lauren Costa, Zeling He, Nicholas B. Link, Ronald G. Hauser, J. Michael Gaziano, Shawn N. Murphy, George Ostrouchov, Yuk-Lam Ho, Edmon Begoli, Junwei Lu, Kelly Cho, Katherine P. Liao, Tianxi Cai
Clinical knowledge extraction via sparse embedding regression (KESER) with multi-center large scale electronic health record data. npj Digit. Medicine 4 (2021)
Edmon Begoli, Robert A. Bridges, Sean Oesch, Kathryn Knight
What Clinical Trials Can Teach Us about the Development of More Resilient AI for Cybersecurity. CoRR (2021)
Edmon Begoli, Ian Goethert, Kathryn Knight
A Lakehouse Architecture for the Management and Analysis of Heterogeneous Data for Biomedical Research and Mega-biobanks. IEEE BigData (2021)
Edmon Begoli, Seung-Hwan Lim, Sudarshan Srinivasan
Performance Profile of Transformer Fine-Tuning in Multi-GPU Cloud Environments. IEEE BigData (2021)
Sudarshan Srinivasan, Edmon Begoli, Maria Mahbub, Kathryn Knight
Nomen est Omen - The Role of Signatures in Ascribing Email Author Identity with Transformer Neural Networks. SP Workshops (2021)
Edmon Begoli, Tyler Akidau, Slava Chernyak, Fabian Hueske, Kathryn Knight, Kenneth Knowles, Daniel Mills, Dan Sotolongo
Watermarks in Stream Processing Systems: Semantics and Comparative Analysis of Apache Flink and Google Cloud Dataflow. Proc. VLDB Endow. 14 (12) (2021)
Dongfang Xu, Manoj Gopale, Jiacheng Zhang, Kris Brown, Edmon Begoli, Steven Bethard
Unified Medical Language System resources improve sieve-based generation and Bidirectional Encoder Representations from Transformers (BERT)-based ranking for concept normalization. J. Am. Medical Informatics Assoc. 27 (10) (2020)
Alexander S. Rich, Cynthia Rudin, David M. P. Jacoby, Robin Freeman, Oliver R. Wearn, Henry Shevlin, Kanta Dihal, Seán S. ÓhÉigeartaigh, James Butcher, Marco Lippi, Przemyslaw Palka, Paolo Torroni, Shannon Wongvibulsin, Edmon Begoli, Gisbert Schneider, Stephen Cave, Mona Sloane, Emmanuel Moss, Iyad Rahwan, Ken Goldberg, David Howard, Luciano Floridi, Jack Stilgoe
AI reflections in 2019. Nat. Mach. Intell. 2 (1) (2020)
Edmon Begoli, Sudarshan Srinivasan, Maria Mahbub
The Transformers for Polystores - The Next Frontier for Polystore Research. Poly/DMAH@VLDB (2020)
Edmon Begoli, Tyler Akidau, Fabian Hueske, Julian Hyde, Kathryn Knight, Kenneth Knowles
One SQL to Rule Them All - an Efficient and Syntactically Idiomatic Approach to Management of Streams and Tables. SIGMOD Conference (2019)
Franco van Wyk, Anahita Khojandi, Akram Mohammed, Edmon Begoli, Robert L. Davis, Rishikesan Kamaleswaran
A minimal set of physiomarkers in continuous high frequency data streams predict adult sepsis onset earlier. Int. J. Medical Informatics 122 (2019)
Edmon Begoli, Tyler Akidau, Fabian Hueske, Julian Hyde, Kathryn Knight, Kenneth Knowles
One SQL to Rule Them All. CoRR (2019)
Edmon Begoli, Tanmoy Bhattacharya, Dimitri Kusnezov
The need for uncertainty quantification in machine-assisted medical decision making. Nat. Mach. Intell. 1 (1) (2019)
Michael Bowie, Edmon Begoli, Byung Park
Improving Quality of Observational Streaming Medical Data by Using Long Short-Term Memory Networks (LSTMs). ICDE Workshops (2018)
Edmon Begoli, Kris Brown, Sudarshan Srinivas, Suzanne Tamang
SynthNotes: A Generator Framework for High-volume, High-fidelity Synthetic Mental Health Notes. IEEE BigData (2018)
Edmon Begoli, Jesús Camacho-Rodríguez, Julian Hyde, Michael J. Mior, Daniel Lemire
Apache Calcite: A Foundational Framework for Optimized Query Processing Over Heterogeneous Data Sources. SIGMOD Conference (2018)
Edmon Begoli, Jesús Camacho-Rodríguez, Julian Hyde, Michael J. Mior, Daniel Lemire
Apache Calcite: A Foundational Framework for Optimized Query Processing Over Heterogeneous Data Sources. CoRR (2018)
Edmon Begoli, Jim Brase, Bambi DeLaRosa, Penelope Jones, Dimitri Kusnezov, Jason Paragas, Rick Stevens, Fred Streitz, Georgia D. Tourassi
Precision Medicine as an Accelerator for Next Generation Cognitive Supercomputing. CoRR (2018)
Benjamin Mayer, Joshua Arnold, Edmon Begoli, Everett Neil Rush, Michael Drewry, Kris Brown, Eduardo Ponce, Sudarshan Srinivas
Evaluating Text Analytic Frameworks for Mental Health Surveillance. ICDE Workshops (2018)
Michael Bowie, Edmon Begoli, Byung Park, Jeevith Bopaiah
Towards an LSTM-based Approach for Detection of Temporally Anomalous Data in Medical Datasets. ICIQ (2017)
Edmon Begoli, Vincent Schlegel, Michael Francis Atiyah, Praise Adeyemo, Tim Baarslag
The Heidelberg Laureate Forum on the moving frontier between mathematics and computer science. XRDS 23 (3) (2017)
Ashwin Kumar Vajantri, Kunwar Deep Singh Toor, Edmon Begoli, Jack Bates
An apache calcite-based polystore variation for federated querying of heterogeneous healthcare sources. IEEE BigData (2017)
Edmon Begoli, James Blair Christian, Vijay Gadepally, Stavros Papadopoulos
An Emerging Role for Polystores in Precision Medicine. DMAH@VLDB (2017)
Edmon Begoli, Ted Dunning, Charlie Frasure
Real-Time Discovery Services over Large, Heterogeneous and Complex Healthcare Datasets Using Schema-Less, Column-Oriented Methods. BigDataService (2016)
Edmon Begoli, Derek Kistler, Jack Bates
Towards a heterogeneous, polystore-like data architecture for the US Department of Veteran Affairs (VA) enterprise analytics. IEEE BigData (2016)
Troy Baer, Paul Peltz Jr., Junqi Yin, Edmon Begoli
Integrating apache spark into PBS-Based HPC environments. XSEDE (2015)
Seung-Hwan Lim, James L. Horey, Yanjun Yao, Edmon Begoli, Qing Cao
Performance Implications from Sizing a VM on Multi-core Systems: A Data Analytic Application's View. IPDPS Workshops (2013)
Edmon Begoli, Cristi L. Ogle, David F. Cihak, Bruce J. MacLennan
Towards an Integrative Computational Foundation for Applied Behavior Analysis in Early Autism Interventions. AIED (2013)
Edmon Begoli, Theodore F. Chila, William H. Inmon
Scenario-driven architecture assessment methodology for large data analysis systems. SysCon (2013)
Edmon Begoli
Architectures and platforms for knowledge discovery from data: workshop at WICSA/ECSA 2012. WICSA/ECSA Companion Volume (2012)
James L. Horey, Edmon Begoli, Raghul Gunasekaran, Seung-Hwan Lim, James J. Nutaro
Big Data Platforms as a Service: Challenges and Approach. HotCloud (2012)
Edmon Begoli, James L. Horey
Design Principles for Effective Knowledge Discovery from Big Data. WICSA/ECSA (2012)
Edmon Begoli
A short survey on the state of the art in architectures and platforms for large scale data analysis and knowledge discovery from data. WICSA/ECSA Companion Volume (2012)