Diego P. Rubert

Publication Activity (10 Years)

Years Active: 2015-2023
Publications (10 Years): 16

Top Topics

Distance Measure

Sequence Alignment

Bipartite Graph

Sequenced Genomes

Top Venues

Algorithms Mol. Biol.

J. Comb. Optim.

Publications

Helmuth O. M. Silva, Diego P. Rubert, Eloi Araujo, Eckhard Steffen, Daniel Doerr, Fábio Viduani Martinez
Algorithms for the genome median under a restricted measure of rearrangement. RAIRO Oper. Res. 57 (3) (2023)
Diego P. Rubert, Marília D. V. Braga
Efficient gene orthology inference via large-scale rearrangements. Algorithms Mol. Biol. 18 (1) (2023)
Diego P. Rubert, Marília D. V. Braga
Gene Orthology Inference via Large-Scale Rearrangements for Partially Assembled Genomes. WABI (2022)
Eloi Araujo, Luiz C. S. Rozante, Diego P. Rubert, Fábio Viduani Martinez
Algorithms for normalized multiple sequence alignments. CoRR (2021)
Diego P. Rubert, Daniel Doerr, Marília D. V. Braga
The potential of family-free rearrangements towards gene orthology inference. J. Bioinform. Comput. Biol. 19 (6) (2021)
Eloi Araujo, Luiz C. S. Rozante, Diego P. Rubert, Fábio Viduani Martinez
Algorithms for Normalized Multiple Sequence Alignments. ISAAC (2021)
Diego P. Rubert, Fábio Viduani Martinez, Marília D. V. Braga
Natural family-free genomic distance. Algorithms Mol. Biol. 16 (1) (2021)
Diego P. Rubert, Fábio Viduani Martinez, Marília D. V. Braga
Natural Family-Free Genomic Distance. WABI (2020)
Marco Aurelio Stefanes, Diego P. Rubert, José Soares
Scalable parallel algorithms for maximum matching and Hamiltonian circuit in convex bipartite graphs. Theor. Comput. Sci. 804 (2020)
Diego P. Rubert, Eloi Araujo, Marco Aurelio Stefanes, Jens Stoye, Fábio Viduani Martinez
Searching and inferring colorful topological motifs in vertex-colored graphs. J. Comb. Optim. 40 (2) (2020)
Diego P. Rubert, Fábio Viduani Martinez, Marília D. V. Braga
Natural family-free genomic distance. CoRR (2020)
Diego P. Rubert, Eloi Araujo, Marco Aurelio Stefanes, Jens Stoye, Fábio Viduani Martinez
On motifs in colored graphs. CoRR (2020)
Diego P. Rubert, Edna Ayako Hoshino, Marília D. V. Braga, Jens Stoye, Fábio Viduani Martinez
Computing the family-free DCJ similarity. BMC Bioinform. (6) (2018)
Diego P. Rubert, Pedro Feijão, Marília Dias Vieira Braga, Jens Stoye, Fábio Viduani Martinez
Approximating the DCJ distance of balanced genomes in linear time. Algorithms Mol. Biol. 12 (1) (2017)
Diego P. Rubert, Gabriela Medeiros, Edna Ayako Hoshino, Marília D. V. Braga, Jens Stoye, Fábio Viduani Martinez
Algorithms for Computing the Family-Free Genomic Similarity Under DCJ. RECOMB-CG (2017)
Diego P. Rubert, Pedro Feijão, Marília D. V. Braga, Jens Stoye, Fábio Viduani Martinez
A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of Duplicates. WABI (2016)
Diego P. Rubert, Eloi Araujo, Marco Aurelio Stefanes
SIMBio: Searching and inferring colorful motifs in biological networks. BIBE (2015)