Derek A. Ruths

Publication Activity (10 Years)

Years Active: 2000-2009
Publications (10 Years): 0

Publications

Troy A. Ruths, Derek A. Ruths, Luay Nakhleh
: an efficiently computable measure of GO-based similarity of gene sets. Bioinform. 25 (9) (2009)
Derek A. Ruths, Luay Nakhleh, Prahlad T. Ram
Rapidly exploring structural and dynamic properties of signaling networks using PathwayOracle. BMC Syst. Biol. 2 (2008)
Cuong Than, Derek A. Ruths, Luay Nakhleh
PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships. BMC Bioinform. 9 (2008)
Derek A. Ruths, Melissa Muller, Jen-Te Tseng, Luay Nakhleh, Prahlad T. Ram
The Signaling Petri Net-Based Simulator: A Non-Parametric Strategy for Characterizing the Dynamics of Cell-Specific Signaling Networks. PLoS Comput. Biol. 4 (2) (2008)
Cuong Than, Derek A. Ruths, Hideki Innan, Luay Nakhleh
Confounding Factors in HGT Detection: Statistical Error, Coalescent Effects, and Multiple Solutions. J. Comput. Biol. 14 (4) (2007)
Cuong Than, Derek A. Ruths, Hideki Innan, Luay Nakhleh
Identifiability Issues in Phylogeny-Based Detection of Horizontal Gene Transfer. Comparative Genomics (2006)
Derek A. Ruths, Luay Nakhleh, M. Sriram Iyengar, Shrikanth A. G. Reddy, Prahlad T. Ram
Hypothesis Generation in Signaling Networks. J. Comput. Biol. 13 (9) (2006)
Derek A. Ruths, Luay Nakhleh
RECOMP: A Parsimony-Based Method for Detecting Recombination. APBC (2006)
Derek A. Ruths, Jen-Te Tseng, Luay Nakhleh, Prahlad T. Ram
De Novo Signaling Pathway Predictions Based on Protein-Protein Interaction, Targeted Therapy and Protein Microarray Analysis. Systems Biology and Computational Proteomics (2006)
Derek A. Ruths, Luay Nakhleh
Techniques for Assessing Phylogenetic Branch Support: A Performance Study. APBC (2006)
Derek A. Ruths, Luay Nakhleh
Recombination and phylogeny: effects and detection. Int. J. Bioinform. Res. Appl. 1 (2) (2005)
Luay Nakhleh, Derek A. Ruths, Li-San Wang
RIATA-HGT: A Fast and Accurate Heuristic for Reconstructing Horizontal Gene Transfer. COCOON (2005)
Derek A. Ruths, Edward S. Chen, Leland Ellis
Arbor 3D: an interactive environment for examining phylogenetic and taxonomic trees in multiple dimensions. Bioinform. 16 (11) (2000)