David R. Penas

Publication Activity (10 Years)

Years Active: 2012-2024
Publications (10 Years): 13

Top Topics

Systems Biology

Reverse Engineering

Estimation Problems

Top Venues

PLoS Comput. Biol.

Appl. Soft Comput.

RAIRO Oper. Res.

Publications

Paul F. Lang, David R. Penas, Julio R. Banga, Daniel Weindl, Béla Novák
Reusable rule-based cell cycle model explains compartment-resolved dynamics of 16 observables in RPE-1 cells. PLoS Comput. Biol. 20 (1) (2024)
Laura Davila-Pena, David R. Penas, Balbina Casas-Méndez
A new two-phase heuristic for a problem of food distribution with compartmentalized trucks and trailers. Int. Trans. Oper. Res. 30 (2) (2023)
Ahmed Taha, Mauricio Patón, David R. Penas, Julio R. Banga, Jorge Rodríguez
Optimal evaluation of energy yield and driving force in microbial metabolic pathway variants. PLoS Comput. Biol. 19 (7) (2023)
Brais González-Rodríguez, Joaquín Ossorio-Castillo, Julio González-Díaz, Ángel M. González-Rueda, David R. Penas, Diego Rodríguez Martínez
Computational advances in polynomial optimization: RAPOSa, a freely available global solver. J. Glob. Optim. 85 (3) (2023)
David R. Penas, Marcos Raydan
A metaheuristic penalty approach for the starting point in nonlinear programming. RAIRO Oper. Res. 54 (2) (2020)
Patricia González, Pablo Argüeso-Alejandro, David R. Penas, Xoán C. Pardo, Julio Saez-Rodriguez, Julio R. Banga, Ramón Doallo
Hybrid parallel multimethod hyperheuristic for mixed-integer dynamic optimization problems in computational systems biology. J. Supercomput. 75 (7) (2019)
David R. Penas, Andrés Gómez, Basilio B. Fraguela, María J. Martín, Santiago Cerviño
Enhanced global optimization methods applied to complex fisheries stock assessment models. Appl. Soft Comput. 77 (2019)
Patricia González, David R. Penas, Xoán C. Pardo, Julio R. Banga, Ramón Doallo
Multimethod Optimization for Reverse Engineering of Complex Biological Networks. PBio@EuroMPI (2018)
Patricia González, David R. Penas, Xoán C. Pardo, Julio R. Banga, Ramón Doallo
Multimethod optimization in the cloud: A case-study in systems biology modelling. Concurr. Comput. Pract. Exp. 30 (12) (2018)
David R. Penas, Patricia González, Jose A. Egea, Ramón Doallo, Julio R. Banga
Parameter estimation in large-scale systems biology models: a parallel and self-adaptive cooperative strategy. BMC Bioinform. 18 (1) (2017)
Diego Teijeiro, Xoán C. Pardo, David R. Penas, Patricia González, Julio R. Banga, Ramón Doallo
A cloud-based enhanced differential evolution algorithm for parameter estimation problems in computational systems biology. Clust. Comput. 20 (3) (2017)
Patricia González, Xoán C. Pardo, David R. Penas, Diego Teijeiro, Julio R. Banga, Ramón Doallo
Using the Cloud for parameter estimation problems: comparing Spark vs MPI with a case-study. CCGrid (2017)
Diego Teijeiro, Xoán C. Pardo, David R. Penas, Patricia González, Julio R. Banga, Ramón Doallo
Evaluation of Parallel Differential Evolution Implementations on MapReduce and Spark. Euro-Par Workshops (2016)
David R. Penas, Patricia González, Jose A. Egea, Julio R. Banga, Ramon Doallo
Parallel Metaheuristics in Computational Biology: An Asynchronous Cooperative Enhanced Scatter Search Method. ICCS (2015)
David R. Penas, Julio R. Banga, Patricia González, Ramon Doallo
Enhanced parallel Differential Evolution algorithm for problems in computational systems biology. Appl. Soft Comput. 33 (2015)
David R. Penas, Julio R. Banga, Patricia González, Ramon Doallo
A Parallel Differential Evolution Algorithm for Parameter Estimation in Dynamic Models of Biological Systems. PACBB (2014)
José Luis Iglesias Allones, David R. Penas, Maria Taboada, Diego Martínez Hernández, Serafín Tellado
A Study of Semantic Proximity between Archetype Terms Based on SNOMED CT Relationships. ProHealth/KR4HC (2012)