Daniel J. Wilson

Publication Activity (10 Years)

Years Active: 2013-2021
Publications (10 Years): 8

Top Topics

Efficient Inference

Machine Learning

Data Transmission

Top Venues

PLoS Comput. Biol.

Publications

David W. Eyre, Mirjam Laager, A. Sarah Walker, Ben S. Cooper, Daniel J. Wilson
Probabilistic transmission models incorporating sequencing data for healthcare-associated Clostridioides difficile outperform heuristic rules and identify strain-specific differences in transmission. PLoS Comput. Biol. 17 (1) (2021)
Richard G. Everitt, Richard Culliford, Felipe J. Medina-Aguayo, Daniel J. Wilson
Sequential Monte Carlo with transformations. Stat. Comput. 30 (3) (2020)
Samaneh Kouchaki, Yang Yang, Timothy M. Walker, A. Sarah Walker, Daniel J. Wilson, Timothy E. A Peto, Derrick W. Crook, CRyPTIC Consortium, David A. Clifton
Application of machine learning techniques to tuberculosis drug resistance analysis. Bioinform. 35 (13) (2019)
Yang Yang, Timothy M. Walker, A. Sarah Walker, Daniel J. Wilson, Timothy E. A Peto, Derrick W. Crook, Farah Shamout, CRyPTIC Consortium, Tingting Zhu, David A. Clifton
DeepAMR for predicting co-occurrent resistance of Mycobacterium tuberculosis. Bioinform. 35 (18) (2019)
Yang Yang, Katherine E. Niehaus, Timothy M. Walker, Zamin Iqbal, A. Sarah Walker, Daniel J. Wilson, Tim E. A. Peto, Derrick W. Crook, E. Grace Smith, Tingting Zhu, David A. Clifton
Machine learning for classifying tuberculosis drug-resistance from DNA sequencing data. Bioinform. 34 (10) (2018)
Nicola De Maio, Colin J. Worby, Daniel J. Wilson, Nicole Stoesser
Bayesian reconstruction of transmission within outbreaks using genomic variants. PLoS Comput. Biol. 14 (4) (2018)
Nicola De Maio, Chieh-Hsi Wu, Daniel J. Wilson
SCOTTI: Efficient Reconstruction of Transmission within Outbreaks with the Structured Coalescent. PLoS Comput. Biol. 12 (9) (2016)
Jessica Hedge, Daniel J. Wilson
Practical Approaches for Detecting Selection in Microbial Genomes. PLoS Comput. Biol. 12 (2) (2016)
Xavier Didelot, Daniel J. Wilson
ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes. PLoS Comput. Biol. 11 (2) (2015)
David W. Eyre, Madeleine L. Cule, David Griffiths, Derrick W. Crook, Tim E. A. Peto, A. Sarah Walker, Daniel J. Wilson
Transmission. PLoS Comput. Biol. 9 (5) (2013)