Christoph Kaleta

Publication Activity (10 Years)

Years Active: 2007-2021
Publications (10 Years): 7

Top Topics

Dynamic Optimization

Metabolic Pathways

Control Structures

Top Venues

PLoS Comput. Biol.

Publications

Jan Ewald, Flora Rivieccio, Lukás Radosa, Stefan Schuster, Axel A. Brakhage, Christoph Kaleta
Dynamic optimization reveals alveolar epithelial cells as key mediators of host defense in invasive aspergillosis. PLoS Comput. Biol. 17 (12) (2021)
Jan Ewald, Martin Bartl, Thomas Dandekar, Christoph Kaleta
Optimality principles reveal a complex interplay of intermediate toxicity and kinetic efficiency in the regulation of prokaryotic metabolism. PLoS Comput. Biol. 13 (2) (2017)
Eugen Bauer, Johannes Zimmermann, Federico Baldini, Ines Thiele, Christoph Kaleta
BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities. PLoS Comput. Biol. 13 (5) (2017)
Sebastian Germerodt, Katrin Bohl, Anja Lück, Samay Pande, Anja Schröter, Christoph Kaleta, Stefan Schuster, Christian Kost
Pervasive Selection for Cooperative Cross-Feeding in Bacterial Communities. PLoS Comput. Biol. 12 (6) (2016)
Gundián M. de Hijas-Liste, Eva Balsa-Canto, Jan Ewald, Martin Bartl, Pu Li, Julio R. Banga, Christoph Kaleta
Optimal programs of pathway control: dissecting the influence of pathway topology and feedback inhibition on pathway regulation. BMC Bioinform. 16 (2015)
Stefan Schuster, Daniel Boley, Philip Möller, Christoph Kaleta
A minimal model for explaining the higher ATP production in the Warburg effect. PeerJ Prepr. 3 (2015)
Ralf Schmidt, Silvio Waschina, Daniela Boettger-Schmidt, Christian Kost, Christoph Kaleta
Computing autocatalytic sets to unravel inconsistencies in metabolic network reconstructions. Bioinform. 31 (3) (2015)
Gundián M. de Hijas-Liste, Eva Balsa-Canto, Julio R. Banga, Christoph Kaleta
Optimal regulatory programs for the control of metabolic pathways: The case of feedback inhibition. MED (2013)
Stefan Schuster, Luis F. de Figueiredo, Anja Schröter, Christoph Kaleta
Combining Metabolic Pathway Analysis with Evolutionary Game Theory. Explaining the occurrence of low-yield pathways by an analytic optimization approach. Biosyst. 105 (2) (2011)
Anna-Katharina Göhler, Öznur Kökpinar, Wolfgang Schmidt-Heck, Robert Geffers, Reinhard Guthke, Ursula Rinas, Stefan Schuster, Knut Jahreis, Christoph Kaleta
More than just a metabolic regulator - elucidation and validation of new targets of PdhR in Escherichia coli. BMC Syst. Biol. 5 (2011)
Christoph Kaleta, Luis F. de Figueiredo, Ines Heiland, Steffen Klamt, Stefan Schuster
Special issue: Integration of OMICs datasets into Metabolic Pathway Analysis. Biosyst. 105 (2) (2011)
Christoph Kaleta, Luis F. de Figueiredo, Sarah Werner, Reinhard Guthke, Michael Ristow, Stefan Schuster
Evidence for Gluconeogenesis from Fatty Acids in Humans. PLoS Comput. Biol. 7 (7) (2011)
Christoph Kaleta, Anna-Katharina Göhler, Stefan Schuster, Knut Jahreis, Reinhard Guthke, Swetlana Nikolajewa
Integrative inference of gene-regulatory networks in Escherichia coli using information theoretic concepts and sequence analysis. BMC Syst. Biol. 4 (2010)
Katrin Bohl, Luis F. de Figueiredo, Oliver Hädicke, Steffen Klamt, Christian Kost, Stefan Schuster, Christoph Kaleta
CASOP GS: Computing Intervention Strategies Targeted at Production Improvement in Genome-scale Metabolic Networks. GCB (2010)
Florian Centler, Christoph Kaleta, Pietro Speroni di Fenizio, Peter Dittrich
A parallel algorithm to compute chemical organizations in biological networks. Bioinform. 26 (14) (2010)
Luis F. de Figueiredo, Stefan Schuster, Christoph Kaleta, David A. Fell
Can sugars be produced from fatty acids? A test case for pathway analysis tools. Bioinform. 25 (1) (2009)
Luis F. de Figueiredo, Adam Podhorski, Angel Rubio, Christoph Kaleta, John E. Beasley, Stefan Schuster, Francisco J. Planes
Computing the shortest elementary flux modes in genome-scale metabolic networks. Bioinform. 25 (23) (2009)
Christoph Kaleta, Luis F. de Figueiredo, Jörn Behre, Stefan Schuster
Computing Elementary Flux Modes in Genome-scale Metabolic Networks. GCB (2009)
Luis F. de Figueiredo, Stefan Schuster, Christoph Kaleta, David A. Fell
Response to comment on 'Can sugars be produced from fatty acids? A test case for pathway analysis tools'. Bioinform. 25 (24) (2009)
Christoph Kaleta, Stephan Richter, Peter Dittrich
Using chemical organization theory for model checking. Bioinform. 25 (15) (2009)
Luis F. de Figueiredo, Stefan Schuster, Christoph Kaleta, David A. Fell
Can sugars be produced from fatty acids? A test case for pathway analysis tools. Bioinform. 24 (22) (2008)
Peter Dittrich, Florian Centler, Christoph Kaleta, Naoki Matsumaru, Pietro Speroni di Fenizio
Chemical organizations in living systems. ALIFE (2008)
Florian Centler, Christoph Kaleta, Pietro Speroni di Fenizio, Peter Dittrich
Computing chemical organizations in biological networks. Bioinform. 24 (14) (2008)
Christoph Kaleta, Florian Centler, Pietro Speroni di Fenizio, Peter Dittrich
Phenotype prediction in regulated metabolic networks. BMC Syst. Biol. 2 (2008)
Roland Schwarz, Chunguang Liang, Christoph Kaleta, Mark Kühnel, Eik Hoffmann, Sergei Kuznetsov, Michael Hecker, Gareth Griffiths, Stefan Schuster, Thomas Dandekar
Integrated network reconstruction, visualization and analysis using YANAsquare. BMC Bioinform. 8 (2007)