Carlos J. Camacho

Publication Activity (10 Years)

Years Active: 2003-2018
Publications (10 Years): 4

Top Topics

Chemical Structures

Grand Challenge

Protein Interaction

Starting Points

Top Venues

J. Chem. Inf. Model.

J. Comput. Aided Mol. Des.

Nucleic Acids Res.

Publications

Nicolas A. Pabon, Yan Xia, Samuel K. Estabrooks, Zhaofeng Ye, Amanda K. Herbrand, Evelyn Süß, Ricardo M. Biondi, Victoria A. Assimon, Jason E. Gestwicki, Jeffrey L. Brodsky, Carlos J. Camacho, Ziv Bar-Joseph
Predicting protein targets for drug-like compounds using transcriptomics. PLoS Comput. Biol. 14 (12) (2018)
Bentley M. Wingert, Rick Oerlemans, Carlos J. Camacho
Optimal affinity ranking for automated virtual screening validated in prospective D3R grand challenges. J. Comput. Aided Mol. Des. 32 (1) (2018)
Zhaofeng Ye, Matthew P. Baumgartner, Bentley M. Wingert, Carlos J. Camacho
Optimal strategies for virtual screening of induced-fit and flexible target in the 2015 D3R Grand Challenge. J. Comput. Aided Mol. Des. 30 (9) (2016)
Matthew P. Baumgartner, Carlos J. Camacho
Choosing the Optimal Rigid Receptor for Docking and Scoring in the CSAR 2013/2014 Experiment. J. Chem. Inf. Model. 56 (6) (2016)
David Ryan Koes, Carlos J. Camacho
Indexing volumetric shapes with matching and packing. Knowl. Inf. Syst. 43 (1) (2015)
David Ryan Koes, Carlos J. Camacho
Shape-based virtual screening with volumetric aligned molecular shapes. J. Comput. Chem. 35 (25) (2014)
David Ryan Koes, Matthew P. Baumgartner, Carlos J. Camacho
Lessons Learned in Empirical Scoring with smina from the CSAR 2011 Benchmarking Exercise. J. Chem. Inf. Model. 53 (8) (2013)
David Ryan Koes, Carlos J. Camacho
PocketQuery: protein-protein interaction inhibitor starting points from protein-protein interaction structure. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
David Ryan Koes, Carlos J. Camacho
ZINCPharmer: pharmacophore search of the ZINC database. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
David Ryan Koes, Carlos J. Camacho
Small-molecule inhibitor starting points learned from protein-protein interaction inhibitor structure. Bioinform. 28 (14) (2012)
David Ryan Koes, Carlos J. Camacho
Small-molecule inhibitor starting points learned from protein-protein interaction inhibitor structure. Bioinform. 28 (6) (2012)
David Ryan Koes, Carlos J. Camacho
Pharmer: Efficient and Exact Pharmacophore Search. J. Chem. Inf. Model. 51 (6) (2011)
N. A. Temiz, Andrew C. Trapp, Oleg A. Prokopyev, Carlos J. Camacho
Optimization of minimum set of protein-DNA interactions: a quasi exact solution with minimum over-fitting. Bioinform. 26 (3) (2010)
Lidio M. C. Meireles, Alexander S. Dömling, Carlos J. Camacho
ANCHOR: a web server and database for analysis of protein-protein interaction binding pockets for drug discovery. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Carlos J. Camacho, Yasuhiro Katsumata, Dana P. Ascherman
Structural and Thermodynamic Approach to Peptide Immunogenicity. PLoS Comput. Biol. 4 (11) (2008)
P. Christoph Champ, Carlos J. Camacho
FastContact: a free energy scoring tool for protein-protein complex structures. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Carlos J. Camacho, Chao Zhang
FastContact: rapid estimate of contact and binding free energies. Bioinform. 21 (10) (2005)
Stephen R. Comeau, David W. Gatchell, Sandor Vajda, Carlos J. Camacho
ClusPro: a fully automated algorithm for protein-protein docking. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Jahnavi C. Prasad, Sandor Vajda, Carlos J. Camacho
Consensus alignment server for reliable comparative modeling with distant templates. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Stephen R. Comeau, David W. Gatchell, Sandor Vajda, Carlos J. Camacho
ClusPro: an automated docking and discrimination method for the prediction of protein complexes. Bioinform. 20 (1) (2004)
Marta Bueno, Carlos J. Camacho, Javier Sancho
What Works (and What Doesn't) in Estimating the Change in Free Energy due to Point Mutations in the Protein Interior. Spanish Bioinformatics Conference (2004)
Jahnavi C. Prasad, Michael Silberstein, Carlos J. Camacho, Sandor Vajda
Homology Modeling of Proteins Using Multiple Models and Consensus Sequence Alignment. WABI (2003)
Jahnavi C. Prasad, Stephen R. Comeau, Sandor Vajda, Carlos J. Camacho
Consensus alignment for reliable framework prediction in homology modeling. Bioinform. 19 (13) (2003)