Asako Koike

Publication Activity (10 Years)

Years Active: 2004-2019
Publications (10 Years): 1

Top Topics

Data Processing

Parallel Computation

Correlation Analysis

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Kouichi Kimura, Asako Koike
Parallel Computation of the Burrows-Wheeler Transform of Short Reads Using Prefix Parallelism. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (1) (2019)
Kouichi Kimura, Asako Koike
Ultrafast SNP analysis using the Burrows-Wheeler transform of short-read data. Bioinform. 31 (10) (2015)
Kouichi Kimura, Asako Koike
Analysis of genomic rearrangements by using the Burrows-Wheeler transform of short-read data. BMC Bioinform. 16 (S18) (2015)
Tomohiro Yasuda, Asako Koike
Genome Mapping by a 60-core Processor. BIOINFORMATICS (2014)
Kouichi Kimura, Asako Koike, Kenta Nakai
A Bit-Parallel Dynamic Programming Algorithm Suitable for DNA Sequence Alignment. J. Bioinform. Comput. Biol. 10 (4) (2012)
Kouichi Kimura, Asako Koike, Kenta Nakai
Seed-Set Construction by Equi-entropy Partitioning for Efficient and Sensitive Short-Read Mapping. WABI (2011)
Makiko Yoshida, Asako Koike
SNPInterForest: A new method for detecting epistatic interactions. BMC Bioinform. 12 (2011)
Natsu Ishii, Asako Koike, Yasunori Yamamoto, Toshihisa Takagi
Figure classification in biomedical literature to elucidate disease mechanisms, based on pathways. Artif. Intell. Medicine 49 (3) (2010)
Asako Koike, Toshihisa Takagi
Classifying Biomedical Figures Using Combination of Bag of Keypoints and Bag of Words. CISIS (2009)
Kouichi Kimura, Yutaka Suzuki, Sumio Sugano, Asako Koike
Computation of Rank and Select Functions on Hierarchical Binary String and Its Application to Genome Mapping Problems for Short-Read DNA Sequences. J. Comput. Biol. 16 (11) (2009)
Natsu Ishii, Asako Koike, Yasunori Yamamoto, Toshihisa Takagi
Figure Classification in Biomedical Literature towards Figure Mining. BIBM (2008)
Asako Koike, Toshihisa Takagi
Knowledge discovery based on an implicit and explicit conceptual network. J. Assoc. Inf. Sci. Technol. 58 (1) (2007)
Shinsuke Dohkan, Asako Koike, Toshihisa Takagi
Improving the Performance of an SVM-Based Method for Predicting Protein-Protein Interactions. Silico Biol. 6 (6) (2006)
Asako Koike, Yoshiki Niwa, Toshihisa Takagi
Automatic extraction of gene/protein biological functions from biomedical text. Bioinform. 21 (7) (2005)
Shinsuke Dohkan, Asako Koike, Toshihisa Takagi
Prediction of Protein-Protein Interactions Using Support Vector Machines. BIBE (2004)
Asako Koike, Toshihisa Takagi
PRIME: automatically extracted PRotein Interactions and Molecular Information databas. Silico Biol. 5 (1) (2004)