Anne-Florence Bitbol

Publication Activity (10 Years)

Years Active: 2014-2023
Publications (10 Years): 9

Top Topics

Multiple Sequence Alignments

Phylogenetic Trees

Top Venues

PLoS Comput. Biol.

Publications

Carlos A. Gandarilla-Pérez, Sergio Pinilla, Anne-Florence Bitbol, Martin Weigt
Combining phylogeny and coevolution improves the inference of interaction partners among paralogous proteins. PLoS Comput. Biol. 19 (3) (2023)
Umberto Lupo, Damiano Sgarbossa, Anne-Florence Bitbol
Pairing interacting protein sequences using masked language modeling. CoRR (2023)
Umberto Lupo, Damiano Sgarbossa, Anne-Florence Bitbol
Protein language models trained on multiple sequence alignments learn phylogenetic relationships. CoRR (2022)
Damiano Sgarbossa, Umberto Lupo, Anne-Florence Bitbol
Generative power of a protein language model trained on multiple sequence alignments. CoRR (2022)
Andonis Gerardos, Nicola Dietler, Anne-Florence Bitbol
Correlations from structure and phylogeny combine constructively in the inference of protein partners from sequences. PLoS Comput. Biol. 18 (5) (2022)
Loïc Marrec, Anne-Florence Bitbol
Resist or perish: Fate of a microbial population subjected to a periodic presence of antimicrobial. PLoS Comput. Biol. 16 (4) (2020)
Guillaume Marmier, Martin Weigt, Anne-Florence Bitbol
Phylogenetic correlations can suffice to infer protein partners from sequences. PLoS Comput. Biol. 15 (10) (2019)
Shou-Wen Wang, Anne-Florence Bitbol, Ned S. Wingreen
Revealing evolutionary constraints on proteins through sequence analysis. PLoS Comput. Biol. 15 (4) (2019)
Anne-Florence Bitbol
Inferring interaction partners from protein sequences using mutual information. PLoS Comput. Biol. 14 (11) (2018)
Anne-Florence Bitbol, David J. Schwab
Quantifying the Role of Population Subdivision in Evolution on Rugged Fitness Landscapes. PLoS Comput. Biol. 10 (8) (2014)