Martin Weigt

Publication Activity (10 Years)

Years Active: 1999-2023
Publications (10 Years): 10

Top Topics

Protein Sequences

Generative Model

Subcellular Localization

Top Venues

PLoS Comput. Biol.

Mach. Learn. Sci. Technol.

Publications

Carlos A. Gandarilla-Pérez, Sergio Pinilla, Anne-Florence Bitbol, Martin Weigt
Combining phylogeny and coevolution improves the inference of interaction partners among paralogous proteins. PLoS Comput. Biol. 19 (3) (2023)
Simone Ciarella, Jeanne Trinquier, Martin Weigt, Francesco Zamponi
Machine-learning-assisted Monte Carlo fails at sampling computationally hard problems. Mach. Learn. Sci. Technol. 4 (1) (2023)
Anna Paola Muntoni, Andrea Pagnani, Martin Weigt, Francesco Zamponi
adabmDCA: adaptive Boltzmann machine learning for biological sequences. BMC Bioinform. 22 (3) (2021)
Edwin Rodriguez Horta, Martin Weigt
On the effect of phylogenetic correlations in coevolution-based contact prediction in proteins. PLoS Comput. Biol. 17 (5) (2021)
Pierre Barrat-Charlaix, Anna Paola Muntoni, Kai Shimagaki, Martin Weigt, Francesco Zamponi
Sparse generative modeling of protein-sequence families. CoRR (2020)
Maureen Muscat, Giancarlo Croce, Edoardo Sarti, Martin Weigt
FilterDCA: Interpretable supervised contact prediction using inter-domain coevolution. PLoS Comput. Biol. 16 (10) (2020)
Giancarlo Croce, Thomas Gueudré, Maria Ruiz-Cuevas, Victoria Keidel, Matteo Figliuzzi, Hendrik Szurmant, Martin Weigt
A multi-scale coevolutionary approach to predict interactions between protein domains. PLoS Comput. Biol. 15 (10) (2019)
Guillaume Marmier, Martin Weigt, Anne-Florence Bitbol
Phylogenetic correlations can suffice to infer protein partners from sequences. PLoS Comput. Biol. 15 (10) (2019)
Edwin Rodriguez Horta, Pierre Barrat-Charlaix, Martin Weigt
Toward Inferring Potts Models for Phylogenetically Correlated Sequence Data. Entropy 21 (11) (2019)
Nika Abdollahi, Alexandre Albani, Eric Anthony, Agnes Baud, Mélissa Cardon, Robert Clerc, Dariusz Czernecki, Romain Conte, Laurent David, Agathe Delaune, Samia Djerroud, Pauline Fourgoux, Nadège Guiglielmoni, Jeanne Laurentie, Nathalie Lehmann, Camille Lochard, Rémi Montagne, Vasiliki Myrodia, Vaitea Opuu, Elise Parey, Lélia Polit, Sylvain Privé, Chloé Quignot, Maria Ruiz-Cuevas, Mariam Sissoko, Nicolas Sompairac, Audrey Vallerix, Violaine Verrecchia, Marc Delarue, Raphaël Guérois, Yann Ponty, Sophie Sacquin-Mora, Alessandra Carbone, Christine Froidevaux, Stéphane Le Crom, Olivier Lespinet, Martin Weigt, Samer Abboud, Juliana S. Bernardes, Guillaume Bouvier, Chloé Dequeker, Arnaud Ferré, Patrick Fuchs, Gaëlle Lelandais, Pierre Poulain, Hugues Richard, Hugo Schweke, Elodie Laine, Anne Lopes
Meet-U: Educating through research immersion. PLoS Comput. Biol. 14 (3) (2018)
Simona Cocco, Rémi Monasson, Martin Weigt
From Principal Component to Direct Coupling Analysis of Coevolution in Proteins: Low-Eigenvalue Modes are Needed for Structure Prediction. PLoS Comput. Biol. 9 (8) (2013)
Evan J. Molinelli, Anil Korkut, Weiqing Wang, Martin L. Miller, Nicholas Paul Gauthier, Xiaohong Jing, Poorvi Kaushik, Qin He, Gordon Mills, David B. Solit, Christine A. Pratilas, Martin Weigt, Alfredo Braunstein, Andrea Pagnani, Riccardo Zecchina, Chris Sander
Perturbation Biology: Inferring Signaling Networks in Cellular Systems. PLoS Comput. Biol. 9 (12) (2013)
Marc Bailly-Bechet, Alfredo Braunstein, Andrea Pagnani, Martin Weigt, Riccardo Zecchina
Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach. BMC Bioinform. 11 (2010)
Alejandro Lage-Castellanos, Andrea Pagnani, Martin Weigt
The importance of dilution in the inference of biological networks. Allerton (2009)
S. Bradde, Alfredo Braunstein, H. Mahmoudi, F. Tria, Martin Weigt, Riccardo Zecchina
Aligning graphs and finding substructures by message passing CoRR (2009)
Michele Leone, Sumedha, Martin Weigt
Clustering by soft-constraint affinity propagation: applications to gene-expression data. Bioinform. 23 (20) (2007)
Martin Weigt, Haijun Zhou
Message passing for vertex covers CoRR (2006)
Alexander K. Hartmann, Wolfgang Barthel, Martin Weigt
Phase transition and finite-size scaling in the vertex-cover problem. Comput. Phys. Commun. 169 (1-3) (2005)
Florent Krzakala, Andrea Pagnani, Martin Weigt
Threshold values, stability analysis and high-q asymptotics for the coloring problem on random graphs CoRR (2004)
Wolfgang Barthel, Alexander K. Hartmann, Martin Weigt
Solving satisfiability problems by fluctuations: The dynamics of stochastic local search algorithms CoRR (2003)
Alexei Vázquez, Martin Weigt
Computational complexity arising from degree correlations in networks CoRR (2002)
Alfredo Braunstein, Marc Mézard, Martin Weigt, Riccardo Zecchina
Constraint Satisfaction by Survey Propagation CoRR (2002)
Roberto Mulet, Andrea Pagnani, Martin Weigt, Riccardo Zecchina
Coloring random graphs CoRR (2002)
Alexander K. Hartmann, Martin Weigt
Statistical mechanics perspective on the phase transition in vertex covering of finite-connectivity random graphs. Theor. Comput. Sci. 265 (1-2) (2001)
Wolfgang Barthel, Alexander K. Hartmann, Michele Leone, Federico Ricci-Tersenghi, Martin Weigt, Riccardo Zecchina
Hiding solutions in random satisfiability problems: A statistical mechanics approach CoRR (2001)
Martin Weigt, Alexander K. Hartmann
Typical solution time for a vertex-covering algorithm on finite-connectivity random graphs CoRR (2000)
Alexander K. Hartmann, Martin Weigt
Statistical mechanics perspective on the phase transition in vertex covering finite-connectivity random graphs CoRR (2000)
Federico Ricci-Tersenghi, Martin Weigt, Riccardo Zecchina
Simplest random K-satisfiability problem CoRR (2000)
Martin Weigt, Alexander K. Hartmann
The number of guards needed by a museum: A phase transition in vertex covering of random graphs CoRR (2000)
Giulio Biroli, Rémi Monasson, Martin Weigt
A variational description of the ground state structure in random satisfiability problems CoRR (1999)