Umberto Lupo

Publication Activity (10 Years)

Years Active: 2020-2023
Publications (10 Years): 9

Top Topics

Multiple Sequence Alignments

Computational Geometry

Protein Sequences

Top Venues

J. Mach. Learn. Res.

J. Appl. Comput. Topol.

Publications

Umberto Lupo, Damiano Sgarbossa, Anne-Florence Bitbol
Pairing interacting protein sequences using masked language modeling. CoRR (2023)
Adele Myers, Saiteja Utpala, Shubham Talbar, Sophia Sanborn, Christian Shewmake, Claire Donnat, Johan Mathe, Umberto Lupo, Rishi Sonthalia, Xinyue Cui, Tom Szwagier, Arthur Pignet, Andri Bergsson, Søren Hauberg, Dmitriy Nielsen, Stefan Sommer, David Klindt, Erik Hermansen, Melvin Vaupel, Benjamin Dunn, Jeffrey Xiong, Noga Aharony, Itsik Pe'er, Felix Ambellan, Martin Hanik, Esfandiar Nava Yazdani, Christoph von Tycowicz, Nina Miolane
ICLR 2022 Challenge for Computational Geometry and Topology: Design and Results. CoRR (2022)
Umberto Lupo, Anibal M. Medina-Mardones, Guillaume Tauzin
Persistence Steenrod modules. J. Appl. Comput. Topol. 6 (4) (2022)
Umberto Lupo, Damiano Sgarbossa, Anne-Florence Bitbol
Protein language models trained on multiple sequence alignments learn phylogenetic relationships. CoRR (2022)
Damiano Sgarbossa, Umberto Lupo, Anne-Florence Bitbol
Generative power of a protein language model trained on multiple sequence alignments. CoRR (2022)
Guillaume Tauzin, Umberto Lupo, Lewis Tunstall, Julian Burella Pérez, Matteo Caorsi, Anibal M. Medina-Mardones, Alberto Dassatti, Kathryn Hess
giotto-tda: : A Topological Data Analysis Toolkit for Machine Learning and Data Exploration. J. Mach. Learn. Res. 22 (2021)
Julian Burella Pérez, Sydney Hauke, Umberto Lupo, Matteo Caorsi, Alberto Dassatti
Giotto-ph: A Python Library for High-Performance Computation of Persistent Homology of Vietoris-Rips Filtrations. CoRR (2021)
Nina Miolane, Matteo Caorsi, Umberto Lupo, Marius Guerard, Nicolas Guigui, Johan Mathe, Yann Cabanes, Wojciech Reise, Thomas Davies, António Leitão, Somesh Mohapatra, Saiteja Utpala, Shailja Shailja, Gabriele Corso, Guoxi Liu, Federico Iuricich, Andrei Manolache, Mihaela Nistor, Matei Bejan, Armand Mihai Nicolicioiu, Bogdan-Alexandru Luchian, Mihai-Sorin Stupariu, Florent Michel, Khanh Dao Duc, Bilal Abdulrahman, Maxim Beketov, Elodie Maignant, Zhiyuan Liu, Marek Cerný, Martin Bauw, Santiago Velasco-Forero, Jesús Angulo, Yanan Long
ICLR 2021 Challenge for Computational Geometry & Topology: Design and Results. CoRR (2021)
Guillaume Tauzin, Umberto Lupo, Lewis Tunstall, Julian Burella Pérez, Matteo Caorsi, Anibal M. Medina-Mardones, Alberto Dassatti, Kathryn Hess
giotto-tda: A Topological Data Analysis Toolkit for Machine Learning and Data Exploration. CoRR (2020)