Anna Kuosmanen

Publication Activity (10 Years)

Years Active: 2013-2019
Publications (10 Years): 5

Top Topics

Prediction Accuracy

Improve The Prediction Accuracy

Dynamic Programming

Directed Acyclic Graph

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Briefings Bioinform.

Publications

Veli Mäkinen, Alexandru I. Tomescu, Anna Kuosmanen, Topi Paavilainen, Travis Gagie, Rayan Chikhi
Sparse Dynamic Programming on DAGs with Small Width. ACM Trans. Algorithms 15 (2) (2019)
Anna Kuosmanen, Topi Paavilainen, Travis Gagie, Rayan Chikhi, Alexandru I. Tomescu, Veli Mäkinen
Using Minimum Path Cover to Boost Dynamic Programming on DAGs: Co-linear Chaining Extended. RECOMB (2018)
Anna Kuosmanen, Tuukka Norri, Veli Mäkinen
Evaluating approaches to find exon chains based on long reads. Briefings Bioinform. 19 (3) (2018)
Anna Kuosmanen, Topi Paavilainen, Travis Gagie, Rayan Chikhi, Alexandru I. Tomescu, Veli Mäkinen
Speeding up Dynamic Programming on DAGs through a Fast Approximation of Path Cover. CoRR (2017)
Anna Kuosmanen, Ahmed Sobih, Romeo Rizzi, Veli Mäkinen, Alexandru I. Tomescu
On using Longer RNA-seq Reads to Improve Transcript Prediction Accuracy. BIOINFORMATICS (2016)
Alexandru I. Tomescu, Travis Gagie, Alexandru Popa, Romeo Rizzi, Anna Kuosmanen, Veli Mäkinen
Explaining a Weighted DAG with Few Paths for Solving Genome-Guided Multi-Assembly. IEEE ACM Trans. Comput. Biol. Bioinform. 12 (6) (2015)
Alexandru I. Tomescu, Anna Kuosmanen, Romeo Rizzi, Veli Mäkinen
A novel min-cost flow method for estimating transcript expression with RNA-Seq. BMC Bioinform. 14 (S-5) (2013)
Alexandru I. Tomescu, Anna Kuosmanen, Romeo Rizzi, Veli Mäkinen
A Novel Combinatorial Method for Estimating Transcript Expression with RNA-Seq: Bounding the Number of Paths. WABI (2013)
Alexandru I. Tomescu, Anna Kuosmanen, Romeo Rizzi, Veli Mäkinen
A Novel Combinatorial Method for Estimating Transcript Expression with RNA-Seq: Bounding the Number of Paths. CoRR (2013)