Alison L. Marsden

Publication Activity (10 Years)

Years Active: 2008-2024
Publications (10 Years): 32

Top Topics

Computational Modeling

Top Venues

PLoS Comput. Biol.

Publications

Luca Pegolotti, Martin R. Pfaller, Natalia L. Rubio, Ke Ding, Rita Brugarolas Brufau, Eric Darve, Alison L. Marsden
Learning reduced-order models for cardiovascular simulations with graph neural networks. Comput. Biol. Medicine 168 (2024)
Martin R. Pfaller, Marcos Latorre, Erica L. Schwarz, Fannie M. Gerosa, Jason M. Szafron, Jay D. Humphrey, Alison L. Marsden
FSGe: A fast and strongly-coupled 3D fluid-solid-growth interaction method. CoRR (2024)
Natalia L. Rubio, Luca Pegolotti, Martin R. Pfaller, Eric F. Darve, Alison L. Marsden
Hybrid Physics-Based and Data-Driven Modeling of Vascular Bifurcation Pressure Differences. CoRR (2024)
Jakob Richter, Jonas Nitzler, Luca Pegolotti, Karthik Menon, Jonas Biehler, Wolfgang A. Wall, Daniele E. Schiavazzi, Alison L. Marsden, Martin R. Pfaller
Bayesian Windkessel calibration using optimized 0D surrogate models. CoRR (2024)
Jonathan Pham, Fanwei Kong, Doug L. James, Alison L. Marsden
Virtual Shape-Editing of Patient-Specific Vascular Models Using Regularized Kelvinlets. IEEE Trans. Biomed. Eng. 71 (6) (2024)
Aaron L. Brown, Matteo Salvador, Lei Shi, Martin R. Pfaller, Zinan Hu, Kaitlin E. Harold, Tzung K. Hsiai, Vijay Vedula, Alison L. Marsden
A Modular Framework for Implicit 3D-0D Coupling in Cardiac Mechanics. CoRR (2023)
Fanwei Kong, Alison L. Marsden
Type and Shape Disentangled Generative Modeling for Congenital Heart Defects. STACOM@MICCAI (2023)
Fanwei Kong, Sascha Stocker, Perry S. Choi, Michael Ma, Daniel B. Ennis, Alison L. Marsden
SDF4CHD: Generative Modeling of Cardiac Anatomies with Congenital Heart Defects. CoRR (2023)
John D. Lee, Jakob Richter, Martin R. Pfaller, Jason M. Szafron, Karthik Menon, Andrea Zanoni, Michael R. Ma, Jeffrey A. Feinstein, Jacqueline Kreutzer, Alison L. Marsden, Daniele E. Schiavazzi
A Probabilistic Neural Twin for Treatment Planning in Peripheral Pulmonary Artery Stenosis. CoRR (2023)
Erica L. Schwarz, Martin R. Pfaller, Jason M. Szafron, Marcos Latorre, Stephanie E. Lindsey, Christopher K. Breuer, Jay D. Humphrey, Alison L. Marsden
A Fluid-Solid-Growth Solver for Cardiovascular Modeling. CoRR (2023)
Luca Pegolotti, Martin R. Pfaller, Natalia L. Rubio, Ke Ding, Rita Brugarolas Brufau, Eric Darve, Alison L. Marsden
Learning Reduced-Order Models for Cardiovascular Simulations with Graph Neural Networks. CoRR (2023)
Priya J. Nair, Martin R. Pfaller, Seraina Anne Dual, Michael Loecher, Doff B. McElhinney, Daniel B. Ennis, Alison L. Marsden
Hemodynamics in Patients with Aortic Coarctation: A Comparison of in vivo 4D-Flow MRI and FSI Simulation. FIMH (2023)
Jonathan Pham, Sofia Wyetzner, Martin R. Pfaller, David W. Parker, Doug L. James, Alison L. Marsden
svMorph: Interactive geometry-editing tools for virtual patient-specific vascular anatomies. CoRR (2022)
Justin Tran, Eroma Abeysinghe, John F. LaDisa Jr., Alison L. Marsden, Marlon E. Pierce
SimVascular Gateway for Education and Research. PEARC (2022)
Chi Zhu, Vijay Vedula, David W. Parker, Nathan M. Wilson, Shawn C. Shadden, Alison L. Marsden
svFSI: A Multiphysics Package for Integrated Cardiac Modeling. J. Open Source Softw. 7 (78) (2022)
Martin R. Pfaller, Jonathan Pham, Aekaansh Verma, Nathan M. Wilson, David W. Parker, Weiguang Yang, Alison L. Marsden
Automated generation of 0D and 1D reduced-order models of patient-specific blood flow. CoRR (2021)
Judith Zimmermann, Kathrin Bäumler, Michael Loecher, Tyler E. Cork, Fikunwa O. Kolawole, Kyle Gifford, Alison L. Marsden, Dominik Fleischmann, Daniel B. Ennis
Quantitative Hemodynamics in Aortic Dissection: Comparing in Vitro MRI with FSI Simulation in a Compliant Model. FIMH (2021)
Martin R. Pfaller, Jonathan Pham, Nathan M. Wilson, David W. Parker, Alison L. Marsden
On the periodicity of cardiovascular fluid dynamics simulations. CoRR (2021)
Noelia Grande Gutiérrez, Mark Alber, Andrew M. Kahn, Jane C. Burns, Mathew Mathew, Brian W. McCrindle, Alison L. Marsden
Computational modeling of blood component transport related to coronary artery thrombosis in Kawasaki disease. PLoS Comput. Biol. 17 (9) (2021)
Ju Liu, Weiguang Yang, Ingrid S. Lan, Alison L. Marsden
Fluid-structure interaction modeling of blood flow in the pulmonary arteries using the unified continuum and variational multiscale formulation. CoRR (2020)
Luca Pegolotti, Martin R. Pfaller, Alison L. Marsden, Simone Deparis
Model order reduction of flow based on a modular geometrical approximation of blood vessels. CoRR (2020)
Gabriel D. Maher, Casey Fleeter, Daniele Schiavazzi, Alison L. Marsden
Geometric Uncertainty in Patient-Specific Cardiovascular Modeling with Convolutional Dropout Networks. CoRR (2020)
Ju Liu, Ingrid S. Lan, Oguz Z. Tikenogullari, Alison L. Marsden
A note on the accuracy of the generalized-α scheme for the incompressible Navier-Stokes equations. CoRR (2020)
Ju Liu, Alison L. Marsden
A robust and efficient iterative method for hyper-elastodynamics with nested block preconditioning. J. Comput. Phys. 383 (2019)
Ju Liu, Weiguang Yang, Melody Dong, Alison L. Marsden
The nested block preconditioning technique for the incompressible Navier-Stokes equations with emphasis on hemodynamic simulations. CoRR (2019)
Gabriel D. Maher, Nathan M. Wilson, Alison L. Marsden
Accelerating cardiovascular model building with convolutional neural networks. Medical Biol. Eng. Comput. 57 (10) (2019)
Vijay Vedula, Juhyun Lee, Hao Xu, C.-C. Jay Kuo, Tzung K. Hsiai, Alison L. Marsden
Correction: A method to quantify mechanobiologic forces during zebrafish cardiac development using 4-D light sheet imaging and computational modeling. PLoS Comput. Biol. 14 (9) (2018)
Nathan M. Wilson, Suresh Marru, Eroma Abeysinghe, Marcus A. Christie, Gabriel D. Maher, Adam R. Updegrove, Marlon E. Pierce, Alison L. Marsden
Using a Science Gateway to Deliver SimVascular Software as a Service for Classroom Instruction. PEARC (2018)
Vijay Vedula, Juhyun Lee, Hao Xu, C.-C. Jay Kuo, Tzung K. Hsiai, Alison L. Marsden
A method to quantify mechanobiologic forces during zebrafish cardiac development using 4-D light sheet imaging and computational modeling. PLoS Comput. Biol. 13 (10) (2017)
Craig J. Goergen, Shawn C. Shadden, Alison L. Marsden
SimVascular as an instructional tool in the classroom. FIE (2017)
Jameson Tyler Merkow, David J. Kriegman, Alison L. Marsden, Zhuowen Tu
Dense Volume-to-Volume Vascular Boundary Detection. CoRR (2016)
Jameson Tyler Merkow, Alison L. Marsden, David J. Kriegman, Zhuowen Tu
Dense Volume-to-Volume Vascular Boundary Detection. MICCAI (3) (2016)
Kathleen Gilbert, Genevieve Farrar, Brett R. Cowan, Avan Suinesiaputra, Christopher Occleshaw, Beau Pontre, James Perry, Sanjeet Hegde, Alison L. Marsden, Jeffrey H. Omens, Andrew D. McCulloch, Alistair A. Young
Creating shape templates for patient specific biventricular modeling in congenital heart disease. EMBC (2015)
Jameson Tyler Merkow, Zhuowen Tu, David J. Kriegman, Alison L. Marsden
Structural Edge Detection for Cardiovascular Modeling. MICCAI (3) (2015)
Mahdi Esmaily-Moghadam, Yuri Bazilevs, Alison L. Marsden
Low entropy data mapping for sparse iterative linear solvers. XSEDE (2013)
Mahdi Esmaily Moghadam, Irene E. Vignon-Clementel, Richard Figliola, Alison L. Marsden
A modular numerical method for implicit 0D/3D coupling in cardiovascular finite element simulations. J. Comput. Phys. 244 (2013)
Jing Xie, Peter I. Frazier, Sethuraman Sankaran, Alison L. Marsden, Saleh Elmohamed
Optimization of computationally expensive simulations with Gaussian processes and parameter uncertainty: Application to cardiovascular surgery. Allerton Conference (2012)
Yuri Bazilevs, Alison L. Marsden, F. Lanza di Scalea, Amit Majumdar, Mahidhar Tatineni
Toward a Computational Steering Framework for Large-Scale Composite Structures Based on Continually and Dynamically Injected Sensor Data. ICCS (2012)
Gregory Long, Han Suk Kim, Alison L. Marsden, Yuri Bazilevs, Jürgen P. Schulze
Immersive volume rendering of blood vessels. ERVR (2012)
Timothy J. Gundert, Alison L. Marsden, Weiguang Yang, David S. Marks, John F. LaDisa Jr.
Identification of Hemodynamically Optimal Coronary Stent Designs Based on Vessel Caliber. IEEE Trans. Biomed. Eng. 59 (7) (2012)
Lutz Lesshafft, Eckart Meiburg, Ben Kneller, Alison L. Marsden
Towards inverse modeling of turbidity currents: The inverse lock-exchange problem. Comput. Geosci. 37 (4) (2011)
Sethuraman Sankaran, Charles Audet, Alison L. Marsden
A method for stochastic constrained optimization using derivative-free surrogate pattern search and collocation. J. Comput. Phys. 229 (12) (2010)
Matthias Ihme, Alison L. Marsden, Heinz Pitsch
Generation of Optimal Artificial Neural Networks Using a Pattern Search Algorithm: Application to Approximation of Chemical Systems. Neural Comput. 20 (2) (2008)