Ahmet Ay

Publication Activity (10 Years)

Years Active: 2010-2022
Publications (10 Years): 11

Top Topics

Biological Networks

Hierarchical Decomposition

Dynamically Evolving

Pattern Discovery

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Yuanfang Ren, Aisharjya Sarkar, Pierangelo Veltri, Ahmet Ay, Alin Dobra, Tamer Kahveci
Pattern Discovery in Multilayer Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (2) (2022)
Kevin Chow, Aisharjya Sarkar, Rasha Elhesha, Pietro Cinaglia, Ahmet Ay, Tamer Kahveci
ANCA: Alignment-Based Network Construction Algorithm. IEEE ACM Trans. Comput. Biol. Bioinform. 18 (2) (2021)
Yuanfang Ren, Ahmet Ay, Alin Dobra, Tamer Kahveci
Characterizing building blocks of resource constrained biological networks. BMC Bioinform. (12) (2019)
Yuanfang Ren, Aisharjya Sarkar, Ahmet Ay, Alin Dobra, Tamer Kahveci
Finding Conserved Patterns in Multilayer Networks. BCB (2019)
Yuanfang Ren, Ahmet Ay, Alin Dobra, Tamer Kahveci
Characterizing Building Blocks of Resource Constrained Biological Networks. BCB (2018)
Kevin Chow, Ahmet Ay, Rasha Elhesha, Tamer Kahveci
ANCA: Alignment-based Network Construction Algorithm. BCB (2018)
Yuanfang Ren, Ahmet Ay, Travis A. Gerke, Tamer Kahveci
Identification of jointly correlated gene sets. J. Bioinform. Comput. Biol. 16 (5) (2018)
Md Abdul Alim, Ahmet Ay, Md Mahmudul Hasan, My T. Thai, Tamer Kahveci
Construction of Signaling Pathways with RNAi Data and Multiple Reference Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (4) (2018)
Yuanfang Ren, Ahmet Ay, Tamer Kahveci
Shortest path counting in probabilistic biological networks. BMC Bioinform. 19 (1) (2018)
Necmettin Yildirim, Mehmet Emin Aktas, Seyma Nur Ozcan, Esra Akbas, Ahmet Ay
Differential transcriptional regulation by alternatively designed mechanisms: A mathematical modeling approach. Silico Biol. 12 (3-4) (2017)
Yuanfang Ren, Qiyao Wang, Md Mahmudul Hasan, Ahmet Ay, Tamer Kahveci
Identifying the topology of signaling networks from partial RNAi data. BMC Syst. Biol. 10 (S-2) (2016)
Qiyao Wang, Yuanfang Ren, Md Mahmudul Hasan, Ahmet Ay, Tamer Kahveci
Construction of signaling networks with incomplete RNAi data. BIBM (2015)
Md Abdul Alim, Ahmet Ay, Md Mahmudul Hasan, My T. Thai, Tamer Kahveci
Multiple reference networks improve accuracy of signaling network construction. BCB (2015)
Ahmet Ay, Dihong Gong, Tamer Kahveci
Hierarchical decomposition of dynamically evolving regulatory networks. BMC Bioinform. 16 (2015)
Jacqueline M. Dresch, Xiaozhou Liu, David N. Arnosti, Ahmet Ay
Thermodynamic modeling of transcription: sensitivity analysis differentiates biological mechanism from mathematical model-induced effects. BMC Syst. Biol. 4 (2010)