Adam K. Sieradzan

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 10

Top Topics

Protein Structure

Top Venues

J. Comput. Chem.

Comput. Phys. Commun.

J. Chem. Inf. Model.

Publications

Krzysztof M. Ocetkiewicz, Cezary Czaplewski, Henryk Krawczyk, Agnieszka G. Lipska, Adam Liwo, Jerzy Proficz, Adam K. Sieradzan, Pawel Czarnul
Multi-GPU UNRES for scalable coarse-grained simulations of very large protein systems. Comput. Phys. Commun. 298 (2024)
Adam K. Sieradzan, Jordi Sans-Duñó, Emilia A. Lubecka, Cezary Czaplewski, Agnieszka G. Lipska, Henryk Leszczynski, Krzysztof M. Ocetkiewicz, Jerzy Proficz, Pawel Czarnul, Henryk Krawczyk, Adam Liwo
Optimization of parallel implementation of UNRES package for coarse-grained simulations to treat large proteins. J. Comput. Chem. 44 (4) (2023)
Agnieszka G. Lipska, Adam K. Sieradzan, Cezary Czaplewski, Andrea D. Lipinska, Krzysztof M. Ocetkiewicz, Jerzy Proficz, Pawel Czarnul, Henryk Krawczyk, Adam Liwo
Long-time scale simulations of virus-like particles from three human-norovirus strains. J. Comput. Chem. 44 (16) (2023)
Agnieszka S. Karczynska, Karolina Zieba, Urszula Uciechowska, Magdalena A. Mozolewska, Pawel Krupa, Emilia A. Lubecka, Agnieszka G. Lipska, Celina Sikorska, Sergey A. Samsonov, Adam K. Sieradzan, Artur Gieldon, Adam Liwo, Rafal Slusarz, Magdalena Slusarz, Jooyoung Lee, Keehyoung Joo, Cezary Czaplewski
Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13. J. Chem. Inf. Model. 60 (3) (2020)
Emilia A. Lubecka, Adam K. Sieradzan, Cezary Czaplewski, Pawel Krupa, Adam Liwo
High Performance Computing with Coarse Grained Model of Biological Macromolecules. Supercomput. Front. Innov. 5 (2) (2018)
Adam K. Sieradzan, Artur Gieldon, Yanping Yin, Yi He, Harold A. Scheraga, Adam Liwo
A new protein nucleic-acid coarse-grained force field based on the UNRES and NARES-2P force fields. J. Comput. Chem. 39 (28) (2018)
Cezary Czaplewski, Agnieszka S. Karczynska, Adam K. Sieradzan, Adam Liwo
UNRES server for physics-based coarse-grained simulations and prediction of protein structure, dynamics and thermodynamics. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Adam K. Sieradzan, Rafal Jakubowski
Introduction of steered molecular dynamics into UNRES coarse-grained simulations package. J. Comput. Chem. 38 (8) (2017)
Pawel Krupa, Magdalena A. Mozolewska, Marta Wisniewska, Yanping Yin, Yi He, Adam K. Sieradzan, Robert Ganzynkowicz, Agnieszka G. Lipska, Agnieszka S. Karczynska, Magdalena Slusarz, Rafal Slusarz, Artur Gieldon, Cezary Czaplewski, Dawid Jagiela, Bartlomiej Zaborowski, Harold A. Scheraga, Adam Liwo
Performance of protein-structure predictions with the physics-based UNRES force field in CASP11. Bioinform. 32 (21) (2016)
Adam K. Sieradzan
Introduction of periodic boundary conditions into UNRES force field. J. Comput. Chem. 36 (12) (2015)