Abdullah N. Arslan

Publication Activity (10 Years)

Years Active: 1999-2021
Publications (10 Years): 8

Top Topics

Hamming Distance

Secondary Structure

Pattern Matching

Top Venues

Inf. Process. Lett.

Int. J. Found. Comput. Sci.

Publications

Abdullah N. Arslan, Mutlu Mete, Anjali Kumari
RNA Secondary Structure Database, Analysis Tool-Set, and Case-Study Results on SARS-CoV-2. BIBM (2021)
Keith A. Monschke, Abdullah N. Arslan
RNA secondary structure graphical rendering library. CIBCB (2018)
Abdullah N. Arslan
A fast algorithm for all-pairs Hamming distances. Inf. Process. Lett. 139 (2018)
Abdullah N. Arslan, Jithendar Anandan, Eric Fry, Keith Monschke, Nitin Ganneboina, Jason Bowerman
Efficient RNA structure comparison algorithms. J. Bioinform. Comput. Biol. 15 (6) (2017)
Abdullah N. Arslan, Nikolay Metodiev Sirakov
Shape Matching for Rigid Objects by Aligning Sequences Based on Boundary Change Points. IWCIA (2017)
Abdullah N. Arslan, Dan He, Yu He, Xindong Wu
Pattern matching with wildcards and length constraints using maximum network flow. J. Discrete Algorithms 35 (2015)
Abdullah N. Arslan, Betsy George, Kirsten Stor
New algorithms for pattern matching with wildcards and length constraints. Discret. Math. Algorithms Appl. 7 (3) (2015)
Abdullah N. Arslan
Fast Algorithms for Local Similarity Queries in Two Sequences. Int. J. Found. Comput. Sci. 26 (5) (2015)
Xindong Wu, Xingquan Zhu, Yu He, Abdullah N. Arslan
PMBC: Pattern mining from biological sequences with wildcard constraints. Comput. Biol. Medicine 43 (5) (2013)
Abdullah N. Arslan, Nikolay Metodiev Sirakov, Salvatore Attardo
Weapon ontology annotation using boundary describing sequences. SSIAI (2012)
Abdullah N. Arslan
A Fast Longest Common Subsequence Algorithm for Similar Strings. LATA (2010)
Abdullah N. Arslan, Arvind Chidri
An Efficient Multiplication Algorithm for Thin Matrices and for Matrices with Similar Rows and Columns. CSC (2010)
Abdullah N. Arslan
An algorithm with linear expected running time for string editing with substitutions and substring reversals. Inf. Process. Lett. 106 (5) (2008)
Yu He, Xindong Wu, Xingquan Zhu, Abdullah N. Arslan
Mining Frequent Patterns with Wildcards from Biological Sequences. IRI (2007)
Dan He, Abdullah N. Arslan, Yu He, Xindong Wu
Iterative Refinement of Repeat Sequence Specification Using Constrained Pattern Matching. BIBE (2007)
Abdullah N. Arslan, Peyman Bizargity
Phylogeny By Top Down Clustering Using a Given Multiple Alignment. BIBE (2007)
Abdullah N. Arslan
Regular expression constrained sequence alignment. J. Discrete Algorithms 5 (4) (2007)
Abdullah N. Arslan
A Largest Common d-Dimensional Subsequence of Two d-Dimensional Strings. FCT (2007)
Abdullah N. Arslan, Dan He
An improved algorithm for the regular expression constrained multiple sequence alignment problem. BIBE (2006)
Dan He, Abdullah N. Arslan
FastPCMSA: An Improved Parallel Algorithm for the Constrained Multiple Sequence Alignment Problem. FCS (2006)
Elena Zheleva, Abdullah N. Arslan
Fast Motif Search in Protein Sequence Databases. CSR (2006)
Dan He, Abdullah N. Arslan
Space-Efficient Parallel Algorithms for the Constrained Multiple Sequence Alignment Problem. BIOCOMP (2006)
Gong Chen, Xindong Wu, Xingquan Zhu, Abdullah N. Arslan, Yu He
Efficient string matching with wildcards and length constraints. Knowl. Inf. Syst. 10 (4) (2006)
Dan He, Abdullah N. Arslan
A* Algorithms for the Constrained Multiple Sequence Alignment Problem. IC-AI (2006)
Abdullah N. Arslan
Efficient Approximate Dictionary Look-Up for Long Words over Small Alphabets. LATIN (2006)
Dan He, Abdullah N. Arslan, Alan C. H. Ling
A Fast Algorithm for the Constrained Multiple Sequence Alignment Problem. Acta Cybern. 17 (4) (2006)
Abdullah N. Arslan
An algorithm for string edit distance allowing substring reversals. BIBE (2006)
Abdullah N. Arslan
Multiple Sequence Alignment Containing a Sequence of Regular Expressions. CIBCB (2005)
Dan He, Abdullah N. Arslan
A Parallel Algorithm for the Constrained Multiple Sequence Alignment Problem. BIBE (2005)
Abdullah N. Arslan
Regular Expression Constrained Sequence Alignment. CPM (2005)
Abdullah N. Arslan, Ömer Egecioglu
Algorithms For The Constrained Longest Common Subsequence Problems. Int. J. Found. Comput. Sci. 16 (6) (2005)
Abdullah N. Arslan, Ömer Egecioglu
Dictionary Look-Up Within Small Edit Distance. Int. J. Found. Comput. Sci. 15 (1) (2004)
Abdullah N. Arslan, Ömer Egecioglu
Algorithms for the Constrained Longest Common Subsequence Problems. Stringology (2004)
Abdullah N. Arslan, Ömer Egecioglu
Dynamic Programming Based Approximation Algorithms for Sequence Alignment with Constraints. INFORMS J. Comput. 16 (4) (2004)
Abdullah N. Arslan, Ömer Egecioglu
Algorithms for Local Alignment with Length Constraints. LATIN (2002)
Abdullah N. Arslan, Ömer Egecioglu
Efficient Computation of Long Similar Subsequences. SPIRE (2002)
Abdullah N. Arslan, Ömer Egecioglu
Dictionary Look-Up within Small Edit Distance. COCOON (2002)
Abdullah N. Arslan, Ömer Egecioglu
Approximation Algorithms for Local Alignment with Length Constraints. Int. J. Found. Comput. Sci. 13 (5) (2002)
Abdullah N. Arslan, Ömer Egecioglu
An Improved Upper Bound on the Size of Planar Convex-Hulls. COCOON (2001)
Abdullah N. Arslan, Ömer Egecioglu, Pavel A. Pevzner
A new approach to sequence comparison: normalized sequence alignment. RECOMB (2001)
Abdullah N. Arslan, Ömer Egecioglu, Pavel A. Pevzner
A new approach to sequence comparison: normalized sequence alignment. Bioinform. 17 (4) (2001)
Abdullah N. Arslan, Ömer Egecioglu
An Efficient Uniform-Cost Normalized Edit Distance Algorithm. SPIRE/CRIWG (1999)