Keyphrases
- sequence alignment
- regular expressions
- pattern matching
- pairwise
- finite automata
- semistructured data
- protein sequences
- query language
- dynamic programming
- gpu accelerated
- string matching
- data sets
- binding sites
- phylogenetic analysis
- amino acids
- approximate matching
- query evaluation
- deterministic finite automata
- multiple alignment
- semistructured databases
- xml schema
- data model
- multiple sequence alignment