SWAT4HCLS

Publications

2023

Thomas Rowlands, Tim Beck
Text mining genome-wide association study literature. SWAT4HCLS (2023)
Esther Thea Inau, Angela Dedie, Ivona Anastasova, Andreas Birkenfeld, Brigitte Fröhlich, Martin Hrabe de Angelis, Michael Roden, Renate Schick, Yaroslav Zdravomyslov, Atinkut Zeleke, Dagmar Waltemath, Martin Preusse
First Steps Towards the FAIRification of the DZD CORE DATASET at the German Center for Diabetes Research. SWAT4HCLS (2023)
Lorcán Pigott-Dix, Robert P. Davey
Attention for Multi-Ontology Concept Recognition. SWAT4HCLS (2023)
Chang Sun, Johan van Soest, Michel Dumontier
Analyze Decentralized Personal Health Data Using Solid, Digital Consent, and Federated Learning. SWAT4HCLS (2023)
Gaetano Manzo, Benjamin Pocklington, Yvan Pannatier, Cathy Gay, Anjani Dhrangadhariya, Sophie Carrard, Roger Hilfiker, Jean-Paul Calbimonte
Towards Semantic Modeling of Patient Trajectories for Rehabilitation of Osteoarthritis. SWAT4HCLS (2023)
Arif Yilmaz, Raghavendra Naidu, Christopher Brewster
FSO: Food Safety Monitoring Ontology. SWAT4HCLS (2023)
Alexander Kellmann, Max Postema, Joris de Keijser, Pjotr Svetachov, Becca Wilson, Esther van Enckevort, Morris A. Swertz
Visualisation and Exploration of Linked Data Using Virtual Reality - a preview of Graph2VR. SWAT4HCLS (2023)
Catherine A. Hayes, Vincenzo Daponte, Frédérique Lisacek
Linking glycan and protein data. SWAT4HCLS (2023)
Jae-Moon Shin, Toyofumi Fujiwara, Atsuko Yamaguchi
Ontology-based expansion of virtual gene panels to improve diagnostic efficiency for rare genetic diseases. SWAT4HCLS (2023)
Özge Erten, Shervin Mehryar, Remzi Çelebi, Christopher Brewster
Predicting missing annotations in Gene Ontology with Knowledge Graph Embeddings and True Path Rule. SWAT4HCLS (2023)
Daphne Wijnbergen, Rajaram Kaliyaperumal, Marco Roos, Eleni Mina
The FAIR Data Point Populator: collaborative FAIRification and population of FAIR Data Points. SWAT4HCLS (2023)
Mercedes Argüello Casteleiro, Niamh Joyce, Nava Maroto, Maria Jesus Fernandez Prieto, Timothy Furmston, Diego Maseda-Fernandez, Phillip Lord, Chris Wroe, John A. Keane, Ying Cheong, Robert Stevens
Text-based phenotyping with Semantic Deep Learning: setting up experiments for women's health. SWAT4HCLS (2023)
Qingliang Li, Sunghwan Kim, Leonid Zaslavsky, Tiejun Cheng, Bo Yu, Evan E. Bolton
Resource Description Framework (RDF) Modeling of Named Entity Co-occurrences Derived from Biomedical Literature in the PubChemRDF. SWAT4HCLS (2023)
Rohitha Ravinder, Tim Fellerhoff, Vishnu Dadi, Lukas Geist, Guillermo Rocamora, Muhammad Talha, Dietrich Rebholz-Schuhmann, Leyla Jael Castro
OntoClue, a framework to compare vector-based approaches for document relatedness using the RELISH corpus. SWAT4HCLS (2023)
Lydie Lane, Kasun Samarasinghe, Pierre-André Michel
A federated query between neXtProt and OrthoDB retrieves 44 uncharacterized human proteins highly expressed in the brain and conserved in Drosophila melanogaster. SWAT4HCLS (2023)
Sebastien Gehant, Elisabeth Coudert, Anne Morgat, Jerven T. Bolleman, Nicole Redaschi, Alan Bridge, The UniProt Consortium
UniProt, ChEBI and IDSM Sachem: exploring biologically relevant ligands. SWAT4HCLS (2023)
Gerhard Kober, Livio Robaldo, Adrian Paschke
Using BPMN for medical guidelines that integrate with FHIR-RDF. SWAT4HCLS (2023)
Adrian Groza, Anca Marginean, Simona Delia Nicoara
An ontology for Age-Related Macular Degeneration using ophthalmologists and language models. SWAT4HCLS (2023)
Jerven T. Bolleman, Alan Bridge, Nicole Redaschi, The UniProt Consortium
Making expert curated knowledge graphs FAIR. SWAT4HCLS (2023)
Karolis Cremers, Marco Roos, Katy Wolstencroft, Eleni Mina, Núria Queralt-Rosinach
Structured review on Huntington's disease iron hypothesis. SWAT4HCLS (2023)
Nora Abdelmageed, Felicitas Löffler, Birgitta König-Ries
BiodivBERT: a Pre-Trained Language Model for the Biodiversity Domain. SWAT4HCLS (2023)
Nelson Quiñones, Cesar Canales, Javier Torres, Dietrich Rebholz-Schuhmann, Leyla Jael Castro, Andrés Aristizábal
Multilabel-classification task for Medline abstracts. SWAT4HCLS (2023)
Josh Moore, Susanne Kunis
NFDI4BIOIMAGE: Perspective for a national bioimaging standard. SWAT4HCLS (2023)
Matthias Löbe, Aliaksandra Shutsko, Carsten Oliver Schmidt, Johannes Darms, Sophie Anne Ines Klopfenstein, Carina Nina Vorisek, Xiaoming Hu, Martin Golebiewski, Juliane Fluck
A Semantic Representation of the NFDI4Health Metadata Schema Utilizing the CEDAR Workbench. SWAT4HCLS (2023)
Pierre Larmande, Bertrand Pitollat, Ndomassi Tando, Yann Pomie, Bill Happi, Valentin Guignon, Manuel Ruiz
AgroLD: a Knowledge Graph for the Plant Sciences. SWAT4HCLS (2023)
Tarcisio Mendes de Farias, Tatsuya Kushida, Ana Claudia Sima, Christophe Dessimoz, Hirokazu Chiba, Frédéric B. Bastian, Hiroshi Masuya
Data in use for Alzheimer disease study: combining gene expression, orthology, bioresource and disease datasets. SWAT4HCLS (2023)
Achilleas Chytas, Nick Bassiliades, Ioannis P. Vlahavas, Pantelis Natsiavas
Towards a Systems Pharmacology Ontology: the use of state-machines paradigm. SWAT4HCLS (2023)
Shuichi Kawashima, Takatomo Fujisawa, Toshiaki Katayama
Genome Variation Ontology for annotation of complex structural variations. SWAT4HCLS (2023)
Pablo Perdomo-Quinteiro, Sergiu Siminiuc, Paraskevi Sakellariou, Marco Roos, Pietro Spitali, Núria Queralt-Rosinach
FAIRification and semantic modelling for Duchenne and Becker Muscular Dystrophy rare diseases. SWAT4HCLS (2023)
Julio Cesar Rangel Reyes, Norio Kobayashi
Developing a semantic event search engine for biomedical events. SWAT4HCLS (2023)
Yi Chen, Fons J. Verbeek, Katherine Wolstencroft
FAIR Functional Enrichment: Assessing and Modelling Provenance in Omics Results. SWAT4HCLS (2023)
Yasunori Yamamoto, Takatomo Fujisawa
To build densely connected Web of RDF data. SWAT4HCLS (2023)
Paul Knowles, Robert Mitwicki, Michal Pietrus
Decentralised semantics in distributed health data ecosystems: Harmonising quantitative data from medical devices for improved insights-driven applications. SWAT4HCLS (2023)
Núria Queralt-Rosinach, Paul N. Schofield, Marco Roos, Robert Hoehndorf
Updating the CEMO ontology for future epidemiological challenges. SWAT4HCLS (2023)
Olga L. Giraldo, Renato Alves, Dimitrios Bampalikis, José M. Fernández, Eva Martin Del Pico, Fotis E. Psomopoulos, Nelson Quiñones, Dhwani Solanki, Allegra Via, Leyla Jael Castro
A metadata analysis for machine-actionable Software Management Plans. SWAT4HCLS (2023)
Elif Ozkan, Remzi Celebi, Arif Yilmaz, Vincent Emonet, Michel Dumontier
Generating Knowledge Graph Based Explanations for Drug Repurposing Predictions. SWAT4HCLS (2023)
Rohitha Ravinder, Leyla Jael Castro, Martin Hofmann-Apitius, Dietrich Rebholz-Schuhmann
Comparative analysis of protein function text-based embeddings and their applicability to prediction tasks. SWAT4HCLS (2023)
Varsha Gouthamchand, Ananya Choudhury, Frank Hoebers, Frederik Wesseling, Mattea Welch, Sejin Kim, Benjamin Haibe-Kains, Joanna Kazmierska, Andre Dekker, Johan van Soest, Leonard Wee
Privacy-Preserving Dashboard for F.A.I.R Head and Neck Cancer data supporting multi-centered collaborations. SWAT4HCLS (2023)
Pantelis Natsiavas, Panos Bonotis
Towards the use of semantic rules to prioritize patient input requests in ePRO systems. SWAT4HCLS (2023)
Ron Henkel, Dagmar Waltemath
Contributions to the reuse and reproducibility of computational biology models. SWAT4HCLS (2023)
Zoe Vasileiou, Georgios Meditskos, Stefanos Vrochidis, Nick Bassiliades
An Explainable Intervention Prediction for Trauma Patients. SWAT4HCLS (2023)
Guohui Xiao, Emily R. Pfaff, Eric Prud'hommeaux, David Booth, Deepak K. Sharma, Nan Huo, Yue Yu, Nansu Zong, Kathryn J. Ruddy, Christopher G. Chute, Guoqian Jiang
FHIR-Ontop-OMOP: Querying OMOP clinical databases as FHIR-compliant Clinical Knowledge Graphs. SWAT4HCLS (2023)
Ewelina Grudzien, Eelke van der Horst, Frank van den Bergh, Maria H. Traka, Duncan Ng, Falk Hildebrand, Chris T. A. Evelo, Susan L. M. Coort, Duygu Dede Sener, Elisa Cirillo
Managing food and microbiome studies data using Fairspace, a flexible and FAIR data management platform. SWAT4HCLS (2023)
Sefika Efeoglu, Adrian Paschke
Fine-Grained Named Entities for Corona News. SWAT4HCLS (2023)
Olga L. Giraldo, María Fernanda Cadena, Andrea Robayo-Gama, Dhwani Solanki, Tim Fellerhoff, Lukas Geist, Rohitha Ravinder, Muhammad Talha, Dietrich Rebholz-Schuhmann, Leyla Jael Castro
Document-to-document relevance assessment for TREC Genomics Track 2005. SWAT4HCLS (2023)
Lea Michaelis, Rasim Atakan Poyraz, Michael Rusongoza Muzoora, Kerstin Gierend, Alexander Bartschke, Dagmar Waltemath, Sylvia Thun
Experiences from compiling a FAIR survey in the German Network University Medicine. SWAT4HCLS (2023)
Judith A. H. Wodke, Ron Henkel, Dagmar Waltemath
MeDaX project plan: How to sustainably improve biomedical (research) data management. SWAT4HCLS (2023)
Petros Liakopoulous, Borbala Banfalvi, Xinyi Wang, Sina Majidian, Tarcisio Mendes de Farias, Christophe Dessimoz, Ana Claudia Sima
Towards predicting essential proteins via federated SPARQL queries. SWAT4HCLS (2023)
Alberto Cámara Ballesteros, Nirupama Benis, César Henrique Bernabé, Inés de Oliveira Coelho, Clémence M. A. Le Cornec, Aylin Demir, Bruna dos Santos Vieira, Jose Antonio Ramírez, K. Joeri van der Velde, Shuxin Zhang, Ronald Cornet, Annika Jacobsen, Marco Roos, Franz Schaefer, Morris A. Swertz, Mark D. Wilkinson
Surveyed common data access policies preferences amongst European Reference Networks. SWAT4HCLS (2023)

volume 3415, 2023

14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), Basel, Switzerland, February 13-16, 2023. SWAT4HCLS 3415 (2023)