BioNLP-OST@EMNLP-IJNCLP

Publications

2019

Junyi Li, Xiaobing Zhou, Yuhang Wu, Bin Wang
YNU-junyi in BioNLP-OST 2019: Using CNN-LSTM Model with Embeddings for SeeDev Binary Event Extraction. BioNLP-OST@EMNLP-IJNCLP (2019)
Renzo M. Rivera Zavala, Paloma Martínez
Deep neural model with enhanced embeddings for pharmaceutical and chemical entities recognition in Spanish clinical text. BioNLP-OST@EMNLP-IJNCLP (2019)
Kai Hakala, Sampo Pyysalo
Biomedical Named Entity Recognition with Multilingual BERT. BioNLP-OST@EMNLP-IJNCLP (2019)
Mohammad Anani, Nazmul Kazi, Matthew Kuntz, Indika Kahanda
RDoC Task at BioNLP-OST 2019. BioNLP-OST@EMNLP-IJNCLP (2019)
Feifan Liu, Xiaoyu Zheng, Bo Wang, Catarina I. Kiefe
DeepGeneMD: A Joint Deep Learning Model for Extracting Gene Mutation-Disease Knowledge from PubMed Literature. BioNLP-OST@EMNLP-IJNCLP (2019)
Dongfang Li, Ying Xiong, Baotian Hu, Hanyang Du, Buzhou Tang, Qingcai Chen
Trigger Word Detection and Thematic Role Identification via BERT and Multitask Learning. BioNLP-OST@EMNLP-IJNCLP (2019)
Mohammad Golam Sohrab, Pham Minh Thang, Makoto Miwa, Hiroya Takamura
A Neural Pipeline Approach for the PharmaCoNER Shared Task using Contextual Exhaustive Models. BioNLP-OST@EMNLP-IJNCLP (2019)
Qi Zhang, Chao Liu, Ying Chi, Xuansong Xie, Xian-Sheng Hua
A Multi-Task Learning Framework for Extracting Bacteria Biotope Information. BioNLP-OST@EMNLP-IJNCLP (2019)
Aitor Gonzalez-Agirre, Montserrat Marimon, Ander Intxaurrondo, Obdulia Rabal, Marta Villegas, Martin Krallinger
PharmaCoNER: Pharmacological Substances, Compounds and proteins Named Entity Recognition track. BioNLP-OST@EMNLP-IJNCLP (2019)
Lenz Furrer, Joseph Cornelius, Fabio Rinaldi
UZH@CRAFT-ST: a Sequence-labeling Approach to Concept Recognition. BioNLP-OST@EMNLP-IJNCLP (2019)
Cong Sun, Zhihao Yang
Transfer Learning in Biomedical Named Entity Recognition: An Evaluation of BERT in the PharmaCoNER task. BioNLP-OST@EMNLP-IJNCLP (2019)
Ilknur Karadeniz, Ömer Faruk Tuna, Arzucan Özgür
BOUN-ISIK Participation: An Unsupervised Approach for the Named Entity Normalization and Relation Extraction of Bacteria Biotopes. BioNLP-OST@EMNLP-IJNCLP (2019)
Xabier Lahuerta, Iakes Goenaga, Koldo Gojenola, Aitziber Atutxa, Maite Oronoz
IxaMed at PharmacoNER Challenge 2019. BioNLP-OST@EMNLP-IJNCLP (2019)
William A. Baumgartner Jr., Michael Bada, Sampo Pyysalo, Manuel R. Ciosici, Negacy D. Hailu, Harrison Pielke-Lombardo, Michael Regan, Lawrence Hunter
CRAFT Shared Tasks 2019 Overview - Integrated Structure, Semantics, and Coreference. BioNLP-OST@EMNLP-IJNCLP (2019)
Pankaj Gupta, Yatin Chaudhary, Hinrich Schütze
BioNLP-OST 2019 RDoC Tasks: Multi-grain Neural Relevance Ranking Using Topics and Attention Based Query-Document-Sentence Interactions. BioNLP-OST@EMNLP-IJNCLP (2019)
Lukas Lange, Heike Adel, Jannik Strötgen
NLNDE: Enhancing Neural Sequence Taggers with Attention and Noisy Channel for Robust Pharmacological Entity Detection. BioNLP-OST@EMNLP-IJNCLP (2019)
Thang Minh Ngo, Jenna Kanerva, Filip Ginter, Sampo Pyysalo
Neural Dependency Parsing of Biomedical Text: TurkuNLP entry in the CRAFT Structural Annotation Task. BioNLP-OST@EMNLP-IJNCLP (2019)
Ying Xiong, Yedan Shen, Yuanhang Huang, Shuai Chen, Buzhou Tang, Xiaolong Wang, Qingcai Chen, Jun Yan, Yi Zhou
A Deep Learning-Based System for PharmaCoNER. BioNLP-OST@EMNLP-IJNCLP (2019)
Pankaj Gupta, Usama Yaseen, Hinrich Schütze
Linguistically Informed Relation Extraction and Neural Architectures for Nested Named Entity Recognition in BioNLP-OST 2019. BioNLP-OST@EMNLP-IJNCLP (2019)
Pilar López-Úbeda, Manuel Carlos Díaz-Galiano, Luis Alfonso Ureña López, Maite Martín-Valdivia
Using Snomed to recognize and index chemical and drug mentions. BioNLP-OST@EMNLP-IJNCLP (2019)
Manuel Stoeckel, Wahed Hemati, Alexander Mehler
When Specialization Helps: Using Pooled Contextualized Embeddings to Detect Chemical and Biomedical Entities in Spanish. BioNLP-OST@EMNLP-IJNCLP (2019)
Jihang Mao, Wanli Liu
Integration of Deep Learning and Traditional Machine Learning for Knowledge Extraction from Biomedical Literature. BioNLP-OST@EMNLP-IJNCLP (2019)
Pan Deng, Haipeng Chen, Mengyao Huang, Xiaowen Ruan, Liang Xu
An ensemble CNN method for biomedical entity normalization. BioNLP-OST@EMNLP-IJNCLP (2019)
Hai-Long Trieu, Anh-Khoa Duong Nguyen, Nhung T. H. Nguyen, Makoto Miwa, Hiroya Takamura, Sophia Ananiadou
Coreference Resolution in Full Text Articles with BERT and Syntax-based Mention Filtering. BioNLP-OST@EMNLP-IJNCLP (2019)
Radu Ion, Vasile Florian Pais, Maria Mitrofan
RACAI's System at PharmaCoNER 2019. BioNLP-OST@EMNLP-IJNCLP (2019)
Robert Bossy, Louise Deléger, Estelle Chaix, Mouhamadou Ba, Claire Nédellec
Bacteria Biotope at BioNLP Open Shared Tasks 2019. BioNLP-OST@EMNLP-IJNCLP (2019)
Yuxing Wang, Kaiyin Zhou, Mina Gachloo, Jingbo Xia
An Overview of the Active Gene Annotation Corpus and the BioNLP OST 2019 AGAC Track Tasks. BioNLP-OST@EMNLP-IJNCLP (2019)
Ashok Thillaisundaram, Theodosia Togia
Biomedical relation extraction with pre-trained language representations and minimal task-specific architecture. BioNLP-OST@EMNLP-IJNCLP (2019)
Proceedings of The 5th Workshop on BioNLP Open Shared Tasks, BioNLP-OST@EMNLP-IJNCLP 2019, Hong Kong, China, November 4, 2019 BioNLP-OST@EMNLP-IJNCLP (2019)
Víctor Suárez-Paniagua
VSP at PharmaCoNER 2019: Recognition of Pharmacological Substances, Compounds and Proteins with Recurrent Neural Networks in Spanish Clinical Cases. BioNLP-OST@EMNLP-IJNCLP (2019)
Wuti Xiong, Fei Li, Ming Cheng, Hong Yu, Donghong Ji
Bacteria Biotope Relation Extraction via Lexical Chains and Dependency Graphs. BioNLP-OST@EMNLP-IJNCLP (2019)