HISB

Publications

2012

Brian E. Chapman, Mona Wong, Claudiu Farcas, Patrick Reynolds
Annio: A Web-Based Tool for Annotating Medical Images with Ontologies. HISB (2012)
Behrang Asadi, Daniel M. Tartakovsky, Mano Ram Maurya, Shankar Subramaniam
Doubly Penalized LASSO for Reconstruction of Biological Networks. HISB (2012)
Yang Chen, Xiaofeng Ren, Guo-Qiang Zhang, Rong Xu
Ontology-Guided Approach to Retrieving Disease Manifestation Images for Health Image Base Construction. HISB (2012)
Haijun Zhai, Todd Lingren, Louise Deléger, Qi Li, Megan Kaiser, Laura Stoutenborough, Imre Solti
Cheap, Fast, and Good Enough for the Non-biomedical Domain but is It Usable for Clinical Natural Language Processing? Evaluating Crowdsourcing for Clinical Trial Announcement Named Entity Annotations. HISB (2012)
Vishal N. Patel, David C. Kaelber
Azathioprine-Induced Comorbidity Network Reveals Patterns and Predictors of Nephrotoxicity and Neutrophilia. HISB (2012)
María Adela Grando, Aziz A. Boxwala, Richard Schwab, Neda Alipanah
Ontological Approach for the Management of Informed Consent Permissions. HISB (2012)
Do Kyoon Kim, Hyunjung Shin, Je-Gun Joung, Su-Yeon Lee, Ju Han Kim
Intra-relation Reconstruction from Inter-relation: miRNA to Gene Expression. HISB (2012)
Zhuohui Gan, Jianwu Wang, Nathan Salomonis, Ilkay Altintas, Andrew D. McCulloch, Alexander C. Zambon
MAAMD: A Workflow to Standardize Meta-Analyses of Affymetrix Microarray Data. HISB (2012)
Jyh-Ying Peng, Yen-Jen Chen, Marc D. Green, Susan L. Forsburg, Chun-Nan Hsu
Simultaneous Segmentation of Cell and Nucleus in Schizosaccharomyces pombe Images with Focus Gradient. HISB (2012)
Allison B. McCoy, Dean F. Sittig, Adam Wright
Comparison of Association Rule Mining and Crowdsourcing for Automated Generation of a Problem-Medication Knowledge Base. HISB (2012)
Jose Eduardo Kroll, Jorge Estefano de Souza, Beatriz Stransky, Gustavo A. de Souza, Sandro J. de Souza
Integrating Transcriptome and Proteome Information for the Analysis of Alternative Splicing. HISB (2012)
Sunghwan Sohn, Sean P. Murphy, Siddhartha Jonnalagadda, Kavishwar B. Wagholikar, Stephen T. Wu, Christopher G. Chute, Hongfang Liu, Scott R. Halgrim
Systematic Analysis of Cross-Institutional Medication Description Patterns in Clinical Notes. HISB (2012)
Juan Anna Wu, William Hsu, Alex A. T. Bui
An Approach for Incorporating Context in Building Probabilistic Predictive Models. HISB (2012)
Mayank Agarwal, Javed Mostafa
Cohort Selection through Content-Based Image Retrieval: vfM A Case Study. HISB (2012)
Salvatore Loguercio, Erik L. Clarke, Benjamin M. Good, Andrew I. Su
A Task-Based Approach for Large-Scale Evaluation of the Gene Ontology. HISB (2012)
Cui Tao, Guoqian Jiang, Thomas A. Oniki, Robert R. Freimuth, Jyotishman Pathak, Qian Zhu, Deepak K. Sharma, Stanley M. Huff, Christopher G. Chute
A Semantic-Web Oriented Representation of Clinical Element Model for Secondary Use of Electronic Healthcare Data. HISB (2012)
Ali Zifan, Brian E. Chapman
Automatic Detection of Coronary Vessels Using Mutli-scale Texture Dictionaries. HISB (2012)
Todd Lingren, Louise Deléger, Katalin Molnár, Haijun Zhai, Jareen Meinzen-Derr, Megan Kaiser, Laura Stoutenborough, Qi Li, Imre Solti
Pre-annotating Clinical Notes and Clinical Trial Announcements for Gold Standard Corpus Development: Evaluating the Impact on Annotation Speed and Potential Bias. HISB (2012)
Shuang Wang, Xiaoqian Jiang, Lucila Ohno-Machado, Lijuan Cui, Samuel Cheng, Hongkai Xiong
Privacy-Preserving Biometric System for Secure Fingerprint Authentication. HISB (2012)
Jiao Li, Zhiyong Lu
A Network Approach for Computational Drug Repositioning. HISB (2012)
Alan Calvitti, Neal Farber, Yunan Chen, Danielle Zuest, Lin Liu, Kristin Bell, Barbara Gray, Zia Agha
Temporal Analysis of Physicians' EHR Workflow during Outpatient Visits. HISB (2012)
Nafise Barzigar, Aminmohammad Roozgard, Pramode K. Verma, Samuel Cheng
Removing Mixture Noise from Medical Images Using Block Matching Filtering and Low-Rank Matrix Completion. HISB (2012)
Son Doan, Lucila Ohno-Machado, Nigel Collier
Enhancing Twitter Data Analysis with Simple Semantic Filtering: Example in Tracking Influenza-Like Illnesses. HISB (2012)
Michael G. Kahn, Lisa M. Schilling, Bethany M. Kwan, Aidan Bunting, Chris Uhrich, Colleen Singleton
Preparing Electronic Health Records Data for Comparative Effectiveness Studies. HISB (2012)
Alexander Hsieh, Son Doan, Michael Conway, Ko-Wei Lin, Hyeoneui Kim
Demographics Identification: Variable Extraction Resource (DIVER). HISB (2012)
Mei Liu, Michael E. Matheny, Yonghui Wu, Eugenia R. McPeek Hinz, Joshua C. Denny, Jonathan S. Schildcrout, Randolph A. Miller, Hua Xu
Detecting Adverse Drug Reactions Using Inpatient Medication Orders and Laboratory Tests Data. HISB (2012)
Gyemin Lee, Hitinder S. Gurm, Zeeshan Syed
Predicting Complications of Percutaneous Coronary Intervention Using a Novel Support Vector Method. HISB (2012)
Brian E. Chapman, Wei Wei, Wendy Webber Chapman
The Frequency of ConText Lexical Items in Diverse Medical Texts. HISB (2012)
Thankam Thyvalikakath, Michael P. Dziabiak, Raymond Johnson, Miguel H. Torres-Urquidy, Jonathan Yabes, Titus Schleyer
Designing Clinical Data Presentation in Electronic Dental Records Using Cognitive Task Analysis Methods. HISB (2012)
Marina Sokolova, Yasser Jafer, David Schramm
Text Mining for Personal Health Information on Twitter. HISB (2012)
Nathan Salomonis
AltAnalyze - An Optimized Platform for RNA-Seq Splicing and Domain-Level Analyses. HISB (2012)
Bernard Gibaud, Germain Forestier, Hugues Benoit-Cattin, Frederic Cervenansky, Patrick Clarysse, Denis Friboulet, Alban Gaignard, Patrick Hugonnard, Carole Lartizien, Hervé Liebgott, Johan Montagnat, Joachim Tabary, Tristan Glatard
OntoVIP: An Ontology for the Annotation of Object Models Used for Medical Image Simulation. HISB (2012)
Siddhartha Jonnalagadda, Guilherme Del Fiol, Richard Medlin, Charlene R. Weir, Marcelo Fiszman, Javed Mostafa, Hongfang Liu
Automatically Extracting Sentences from Medline Citations to Support Clinicians' Information Needs. HISB (2012)
Matthew Munoz, Alexander C. Zambon
InSilico-ChIP: A Coregulation and Evolutionary Conservation Based Transcription Factor and Target Gene Predictor. HISB (2012)
Eugenia R. McPeek Hinz, Lisa Bastarache, Joshua C. Denny
A General Purpose Phenotype Algorithm for Venous Thromboembolism Using Billing Codes and Natural Language Processing. HISB (2012)
Md. Mahmudur Rahman, Daekeun You, Matthew S. Simpson, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma
An Interactive Image Retrieval Framework for Biomedical Articles Based on Visual Region-of- Interest (ROI) Identification and Classification. HISB (2012)
Anni Coden, Daniel Gruhl, Neal Lewis, Michael A. Tanenblatt, Joe Terdiman
SPOT the Drug! An Unsupervised Pattern Matching Method to Extract Drug Names from Very Large Clinical Corpora. HISB (2012)
Prasanna Kumar Desikan, Nisheeth Srivastava, Tamara Winden, Tammie Lindquist, Heather Britt, Jaideep Srivastava
Early Prediction of Potentially Preventable Events in Ambulatory Care Sensitive Admissions from Clinical Data. HISB (2012)
Olga V. Patterson, Gail S. Kerr, J. Steuart Richards, Carl A. Nunziato, David D. Maron, Richard L. Amdur, Scott L. DuVall
Identifying Provider Counseling Practices Using Natural Language Processing: Gout Example. HISB (2012)
Vijay Garla, Cynthia Brandt
Knowledge-Based Biomedical Word Sense Disambiguation: An Evaluation and Application to Clinical Document Classification. HISB (2012)
Seemeen Karimi, Xiaoqian Jiang, Pamela C. Cosman, Harry E. Martz
Evaluation of Segmentation Algorithms in CT Scanning. HISB (2012)
Richard Rauscher
Cloud Computing Considerations for Biomedical Applications. HISB (2012)
Jiao Li, Ritu Khare, Zhiyong Lu
Improving Online Access to Drug-Related Information. HISB (2012)
Vanderson Silva, Fabiana S. Santana, Beatriz Stransky, Sandro J. de Souza
Modelling the Effects of Genetic Changes in Tumour Progression. HISB (2012)
Dhundy Bastola, Scott McGrath, Sanjukta Bhowmick, Ishwor Thapa
A Comparison of Computational Approaches in the Molecular Identification of Pathogenic Organisms. HISB (2012)
Qingxiang Zhu, Hongkai Xiong, Xiaoqian Jiang
Pulmonary Blood Vessels and Nodules Segmentation via Vessel Energy Function and Radius-Variable Sphere Model. HISB (2012)
Gabriel Humpire-Mamani, Agma Juci Machado Traina, Caetano Traina Jr.
FSCoMS: Feature Selection of Medical Images Based on Compactness Measure from Scatterplots. HISB (2012)
Xiaoqian Jiang, Shuang Wang, Zhanglong Ji, Lucila Ohno-Machado, Li Xiong
A Randomized Response Model for Privacy-Preserving Data Dissemination. HISB (2012)
Jonathan Woodbridge, Bobak Mortazavi, Majid Sarrafzadeh, Alex A. T. Bui
Aggregated Indexing of Biomedical Time Series Data. HISB (2012)
Danielle L. Mowery, Pamela W. Jordan, Janyce Wiebe, Wendy Webber Chapman, Lin Liu
Does Domain Knowledge Matter for Assertion Annotation in Clinical Texts? HISB (2012)