CRI

Publications

2017

Soumya Ghosh, Zhaonan Sun, Ying Li, Yu Cheng, Amrita Mohan, Cristina Sampaio, Jianying Hu
An Exploration of Latent Structure in Observational Huntington's Disease Studies. CRI (2017)
Marzyeh Ghassemi, Mike Wu, Michael C. Hughes, Peter Szolovits, Finale Doshi-Velez
Predicting intervention onset in the ICU with switching state space models. CRI (2017)
Jennifer J. Liang, Ching-Huei Tsou, Murthy V. Devarakonda
Ground Truth Creation for Complex Clinical NLP Tasks - an Iterative Vetting Approach and Lessons Learned. CRI (2017)
Evanette Burrows, Charles Bailey
Standardizing clinical diagnoses: impact of alternate terminology selection. CRI (2017)
Jung-wei Fan, Jianrong Li, Yves A. Lussier
Graph-based Clustering of ICD-10 Codes with Alternative Semantic Contexts. CRI (2017)
Qing T. Zeng, Joseph L. Goulet, Nell J. Marshall, Craig A. Morioka
Integrative Health Informatics: The VHA Experience. CRI (2017)
Kun Lin, Ping Zhang, Gigi Y. Yuen-Reed, Ying Li, Jianying Hu
Improving predictive models with clustered sequences: An Application on Heart Failure Risk Prediction. CRI (2017)
Brian T. Bucher, Danielle L. Mowery, Melissa Castine, Wendy W. Chapman
Towards Automatic Detection of Surgical Site Infections. CRI (2017)
Jingcheng Du, Jun Xu, Hsing-yi Song, Cui Tao
Leveraging Machine Learning Based Approaches to Assess Human Papillomavirus Vaccination Sentiment Trends with Twitter. CRI (2017)
Lori C. Phillips, Christopher D. Herrick, Shawn N. Murphy
i2b2 on OMOP CDM. CRI (2017)
Jeffrey S. Brown, Robert Ball, David S. Carrell, Leonard W. D'Avolio, Keith Marsolo
Is an Algorithm Just an Algorithm? How to Define Clinical Concepts for Use in Comparative Safety and Effectiveness Distributed Research Networks. CRI (2017)
Philip Trevvett, Isha johri, Bhanu Bahl
Procedures to Ensure Baseline Data Quality for a SHRINE Network. CRI (2017)
Victor M. Castro, Nich Wattanasin, Vivian S. Gainer, Bhaswati Ghosh, Shawn N. Murphy
Applying Computed Phenotypes Derived from Electronic Health Records in the Partners HealthCare Biobank Using i2b2. CRI (2017)
Joseph Klobusický, Alexander Murph, Alexander C. Robinson, Nathaniel D. Bastian, Paul M. Griffin, Shravan Kethireddy, Nathan Ryan
Machine Learning and Statistical Techniques to Predict Sepsis: Unifying Previous Work. CRI (2017)
Finn Kuusisto, John W. Steill, Zhaobin Kuang, James A. Thomson, David Page, Ron M. Stewart
A Simple Text Mining Approach for Ranking Pairwise Associations in Biomedical Applications. CRI (2017)
Jette Henderson, Ryan Bridges, Joyce C. Ho, Byron C. Wallace, Joydeep Ghosh
PheKnow-Cloud: A Tool for Evaluating High-Throughput Phenotype Candidates using Online Medical Literature. CRI (2017)
Sheri R. Tibbs, Karen Chiswell, Sara Calvert
Making Aggregate Content of ClinicalTrials.gov Freely Available to Everyone. CRI (2017)
Justin J. Baraboo, Deendayal Dinakarpandian, Sherwin Chan
Automated Prediction of Hepatic Arterial Stenosis. CRI (2017)
David Walend, Benjamin Carmen, Marc Ciriello, Isha johri, william Simons, Bhanu Bahl
Protecting Patient Identity in SHRINE Without Lockout. CRI (2017)
Ania Berchuck, Michael G. Kahn, Shelley A. Rusincovitch, Daniella Meeker, Shawn N. Murphy, Ravi Bhosale, Keith Marsolo, Michael E. Matheny, L. Russell Waitman, Rachel Hess
Strategic Assessment and Planning for the PCORnet Common Data Model. CRI (2017)
Meliha Yetisgen, Lucy Vanderwende
Automatic Identification of Substance Abuse Events from Clinical Text. CRI (2017)
Juan M. Banda, Yoni Halpern, David A. Sontag, Nigam Shah
Electronic phenotyping with APHRODITE and the Observational Health Sciences and Informatics (OHDSI) data network. CRI (2017)
Jennifer H. Garvin, Megha Kalsy, Cynthia Brandt, Stephen Luther, Guy Divita, Gregorio Coronado, Douglas Redd, Qing T. Zeng
An Evolving Ecosystem for Natural Language Processing in Department of Veterans Affairs. CRI (2017)
Thomas R. Campion Jr., Evan Sholle, Marcos Davila
Generalizable Middleware to Support Use of REDCap Dynamic Data Pull for Integrating Clinical and Research Data. CRI (2017)
Snehil Gupta, Connie Zabarovskaya, Brian Romine, Daniel Vianello, Cynthia Vitale, Leslie D. McIntosh
Incorporating Data Citation in a Biomedical Repository: An Implementation Use Case. CRI (2017)
Patrick Yukman, Keith Danahey, Brittany A. Borden, Samuel L. Volchenboum, Mark J. Ratain, Peter H. O'Donnell
The Pharmacogenomics Research and Implementation DatabasE (PRIDE). CRI (2017)
Yiye Zhang, Rema Padman
On Combining Clinical and Cost Pathways for Multimorbid Patients Using Electronic Health Record Data. CRI (2017)
Anoop M. Mayampurath, Dana P. Edelson, Michael D. Howell, Matthew M. Churpek, Samuel L. Volchenboum
A Deeper Exploration of Contagious Risk and the Neighborhood Effect. CRI (2017)
Ron C. Li, Lisa Shieh, Gomathi Krishnan, Daniel Z. Fang, Jonathan H. Chen
Problem based charting: a method for improving problem list utilization and completeness. CRI (2017)
Joseph Finkelstein, Steven Erde, Joseph V. Errante
Mobile Data Collection Tool to Document Adverse Events in a Dental Practice. CRI (2017)
Adelaide M. Arruda-Olson, Naveed Afzal, Homam Moussa Pacha, Ahmad Said, Bradley Lewis, Christopher Scott, Kent Bailey, Hongfang Liu, Iftikhar J. Kullo
Mortality Prognostic Model for Peripheral Arterial Disease. CRI (2017)
Jonathan C. Badger, Eric R. LaRose, Ross Kleiman, Richard L. Berg, James G. Linneman, Richard Hansen, David Page, Peggy L. Peissig
SCCS for Detection of Differences in Brand and Generic Adverse Drug Events. CRI (2017)
Xiaoqian Jiang, Claudiu Farcas, Benedict Paten, Mark Diekhans, Paul Avillach, Wallace Wadge, David Haussler, Lucila Ohno-Machado, Ida Sim
Count Everything: Secure Count Query Framework Across Big Data Centers. CRI (2017)
Leon Rozenblit, Piper Ranallo, David E. Stark, Thomas H. McCoy, Jessica D. Tenenbaum
Mental Health Informatics Panel. CRI (2017)
Eric Prud'hommeaux, Harold R. Solbrig, Guoqian Jiang
ShEx, RDF and FHIR. CRI (2017)
Ergin Soysal, Jeremy L. Warner, Joshua C. Denny, Hua Xu
Identifying Metastases related Information from Pathology Reports of Lung Cancer Patients. CRI (2017)
Daniel R. Harris, Ramakanth Kavuluru, Jerzy W. Jaromczyk, Todd R. Johnson
Rapid and Reusable Text Visualization and Exploration Development with DELVE. CRI (2017)
Kyle A. Marshall, Shravan Kethireddy, Adam M. Brown, Jeffrey W. Prichard, Myra L. Wilkerson
Crowdsourcing to Create Structured Data Sets for Quality Improvement. CRI (2017)
Jeffrey G. Klann, Vijay A. Raghavan, Sarah Weiler, Kenneth D. Mandl, Shawn N. Murphy
Needs-Driven Data Completeness Dashboard in a Multi-Site Research Network. CRI (2017)
Stéphane M. Meystre, Youngjun Kim, Glenn T. Gobbel, Michael E. Matheny, Andrew Redd, Bruce E. Bray, Jennifer H. Garvin
Heart Failure Data for Patient Treatment Goals at the Point of Care: Automated Data Extraction and Consistent Reference Standard Importance. CRI (2017)
Hanieh Razzaghi, Ritu Khare, Levon Utidjian, Rachel Teneralli, Charles Bailey
Managing Science Query Traffic in a Large Pediatric Data Research Network. CRI (2017)
Elizabeth Cary, Aaron M. Secrest, Chrissy Daniels, Wendy W. Chapman, Mike Conway, Danielle L. Mowery
Classifying Sentiment of Free-Text Comments in Patient Satisfaction Surveys. CRI (2017)
Radhakrishnan Nagarajan, Jeffery C. Talbert
Network Abstractions of Prescription Patterns in a Medicaid Population. CRI (2017)
Brett R. South, Lee M. Christensen, Danielle L. Mowery, Melissa Castine, Marzieh Vali, Marjorie Carter, Mike Conway, Adi V. Gundlapalli, Wendy W. Chapman, Salomeh Keyhani
Automatic Extraction of Social Determinants of Health from Veterans Affairs Clinical Documents using Natural Language Processing. CRI (2017)
Keith Danahey, Wenndy Hernandez, Samuel L. Volchenboum, Mark J. Ratain, Minoli Perera, Peter H. O'Donnell
Ethnicity-specific pharmacogenomic clinical decision support in the Genomic Prescribing System. CRI (2017)
Yangmei Zhou, David W. Larson, Elizabeth B. Habermann, James M. Naessens, Hongfang Liu, Sunghwan Sohn
Prediction of Organ Space Colorectal Surgical Site Infections Using Prognostic Bayesian Networks. CRI (2017)
Patrick Eads, Craig H. Ganoe, Rodney Jacobson, Tracy Onega, Steven B. Andrews, Nishant Kumar, Brian G. Levin, John H. Higgins
Developing a Method of Transferring Healthcare Research Data from Data Broker to Researcher: Interactive Secure Institutional Data Release Overseer (ISIDRO). CRI (2017)
Teeradache Viangteeravat, Oguz Akbilgic, Robert L. Davis
Analyzing Electronic Medical Records to Predict Risk of DIT (Death, Intubation, or Transfer to ICU) in Pediatric Respiratory Failure or Related Conditions. CRI (2017)
Alejandro Schuler, David A. Wulf, Yun Lu, Jennifer M. Baker, Gabriel J. Escobar, Nigam Shah, Vincent X. Liu
A novel propensity modeling approach to estimate the causal impact of acute organ dysfunction on long-term survival in sepsis. CRI (2017)
Xiangrui Li, Dongxiao Zhu, Ming Dong, Milad Zafar Nezhad, Alexander T. Janke, Phillip Levy
SDT: A Tree Method for Detecting Patient Subgroups with Personalized Risk Factors. CRI (2017)