BioNLP@HLT-NAACL

Publications

2012

Sampo Pyysalo, Pontus Stenetorp, Tomoko Ohta, Jin-Dong Kim, Sophia Ananiadou
New Resources and Perspectives for Biomedical Event Extraction. BioNLP@HLT-NAACL (2012)
James Cogley, Nicola Stokes, Joe Carthy, John Dunnion
Analyzing Patient Records to Establish If and When a Patient Suffered from a Medical Condition. BioNLP@HLT-NAACL (2012)
Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, BioNLP@HLT-NAACL Montrèal, Canada, June 8, 2012 BioNLP@HLT-NAACL (2012)
Dana Movshovitz-Attias, William W. Cohen
Alignment-HMM-based Extraction of Abbreviations from Biomedical Text. BioNLP@HLT-NAACL (2012)
Emilia Apostolova, Noriko Tomuro, Pattanasak Mongkolwat, Dina Demner-Fushman
Domain Adaptation of Coreference Resolution for Radiology Reports. BioNLP@HLT-NAACL (2012)
Yue Wang, Jin-Dong Kim
Boosting the protein name recognition performance by bootstrapping on selected text. BioNLP@HLT-NAACL (2012)
Jin-Dong Kim, Yue Wang
PubAnnotation - a persistent and sharable corpus and annotation repository. BioNLP@HLT-NAACL (2012)
Dana Movshovitz-Attias, William W. Cohen
Bootstrapping Biomedical Ontologies for Scientific Text using NELL. BioNLP@HLT-NAACL (2012)
Sun Kim, Won Kim, Donald C. Comeau, W. John Wilbur
Classifying Gene Sentences in Biomedical Literature by Combining High-Precision Gene Identifiers. BioNLP@HLT-NAACL (2012)
Brett R. South, Shuying Shen, Jianwei Leng, Tyler Forbush, Scott L. DuVall, Wendy W. Chapman
A Prototype Tool Set to Support Machine-Assisted Annotation. BioNLP@HLT-NAACL (2012)
Danielle L. Mowery, Sumithra Velupillai, Wendy W. Chapman
Medical diagnosis lost in translation - Analysis of uncertainty and negation expressions in English and Swedish clinical texts. BioNLP@HLT-NAACL (2012)
Marie Dupuch, Laëtitia Dupuch, Thierry Hamon, Natalia Grabar
Semantic distance and terminology structuring methods for the detection of semantically close terms. BioNLP@HLT-NAACL (2012)
Richard Boyce, Gregory Gardner, Henk Harkema
Using Natural Language Processing to Extract Drug-Drug Interaction Information from Package Inserts. BioNLP@HLT-NAACL (2012)
Binod Gyawali, Thamar Solorio, Yassine Benajiba
Grading the Quality of Medical Evidence. BioNLP@HLT-NAACL (2012)
Catalina O. Tudor, K. Vijay-Shanker
RankPref: Ranking Sentences Describing Relations between Biomedical Entities with an Application. BioNLP@HLT-NAACL (2012)
Preethi Raghavan, Eric Fosler-Lussier, Albert M. Lai
Temporal Classification of Medical Events. BioNLP@HLT-NAACL (2012)
Thierry Hamon, Christopher Engström, Mounira Manser, Zina Badji, Natalia Grabar, Sergei Silvestrov
Combining Compositionality and Pagerank for the Identification of Semantic Relations between Biomedical Words. BioNLP@HLT-NAACL (2012)
Emily Prud'hommeaux, Brian Roark
Graph-based alignment of narratives for automated neurological assessment. BioNLP@HLT-NAACL (2012)
Óscar Ferrández, Brett R. South, Shuying Shen, Stéphane M. Meystre
A Hybrid Stepwise Approach for De-identifying Person Names in Clinical Documents. BioNLP@HLT-NAACL (2012)
Nate Sutton, Laura Wojtulewicz, Neel Mehta, Graciela Gonzalez
Automatic Approaches for Gene-Drug Interaction Extraction from Biomedical Text: Corpus and Comparative Evaluation. BioNLP@HLT-NAACL (2012)
Timothy A. Miller, Dmitriy Dligach, Guergana Savova
Active Learning for Coreference Resolution. BioNLP@HLT-NAACL (2012)
Rezarta Islamaj Dogan, Zhiyong Lu
An improved corpus of disease mentions in PubMed citations. BioNLP@HLT-NAACL (2012)
Ying Yan, Jee-Hyub Kim, Samuel Croset, Dietrich Rebholz-Schuhmann
Finding small molecule and protein pairs in scientific literature using a bootstrapping method. BioNLP@HLT-NAACL (2012)
Weiwei Cheng, Judita Preiss, Mark Stevenson
Scaling up WSD with Automatically Generated Examples. BioNLP@HLT-NAACL (2012)
Ramnath Balasubramanyan, Kathryn Rivard, William W. Cohen, Jelena Jakovljevic, John L. Woolford
Evaluating Joint Modeling of Yeast Biology Literature and Protein-Protein Interaction Networks. BioNLP@HLT-NAACL (2012)
Pawel Matykiewicz, John Pestian
Effect of small sample size on text categorization with support vector machines. BioNLP@HLT-NAACL (2012)
Yaqiang Wang, Yiguang Liu, Zhonghua Yu, Li Chen, Yongguang Jiang
A Preliminary Work on Symptom Name Recognition from Free-Text Clinical Records of Traditional Chinese Medicine using Conditional Random Fields and Reasonable Features. BioNLP@HLT-NAACL (2012)
Attapol Thamrongrattanarit, Michael Shafir, Michael Crivaro, Bensiin Borukhov, Marie Meteer
What can NLP tell us about BioNLP? BioNLP@HLT-NAACL (2012)
Jari Björne, Sofie Van Landeghem, Sampo Pyysalo, Tomoko Ohta, Filip Ginter, Yves Van de Peer, Sophia Ananiadou, Tapio Salakoski
PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations. BioNLP@HLT-NAACL (2012)
Shefali Sharma, Leslie Lange, José Luis Ambite, Yigal Arens, Chun-Nan Hsu
Exploring Label Dependency in Active Learning for Phenotype Mapping. BioNLP@HLT-NAACL (2012)
Marie Meteer, Bensiin Borukhov, Mike Crivaro, Michael Shafir, Attapol Thamrongrattanarit
MedLingMap: A growing resource mapping the Bio-Medical NLP field. BioNLP@HLT-NAACL (2012)