BioNLP@NAACL-HLT

Publications

2021

Wei Zhu, Yilong He, Ling Chai, Yunxiao Fan, Yuan Ni, Guotong Xie, Xiaoling Wang
paht_nlp @ MEDIQA 2021: Multi-grained Query Focused Multi-Answer Summarization. BioNLP@NAACL-HLT (2021)
Asma Ben Abacha, Yassine Mrabet, Yuhao Zhang, Chaitanya Shivade, Curtis P. Langlotz, Dina Demner-Fushman
Overview of the MEDIQA 2021 Shared Task on Summarization in the Medical Domain. BioNLP@NAACL-HLT (2021)
Khalil Mrini, Franck Dernoncourt, Seunghyun Yoon, Trung Bui, Walter Chang, Emilia Farcas, Ndapa Nakashole
UCSD-Adobe at MEDIQA 2021: Transfer Learning and Answer Sentence Selection for Medical Summarization. BioNLP@NAACL-HLT (2021)
Madhumita Sushil, Simon Suster, Walter Daelemans
Are we there yet? Exploring clinical domain knowledge of BERT models. BioNLP@NAACL-HLT (2021)
Shogo Ujiie, Hayate Iso, Shuntaro Yada, Shoko Wakamiya, Eiji Aramaki
End-to-end Biomedical Entity Linking with Span-based Dictionary Matching. BioNLP@NAACL-HLT (2021)
Dongfang Xu, Steven Bethard
Triplet-Trained Vector Space and Sieve-Based Search Improve Biomedical Concept Normalization. BioNLP@NAACL-HLT (2021)
Kamal Raj Kanakarajan, Bhuvana Kundumani, Malaikannan Sankarasubbu
BioELECTRA: Pretrained Biomedical text Encoder using Discriminators. BioNLP@NAACL-HLT (2021)
Yifan He, Mosha Chen, Songfang Huang
damo_nlp at MEDIQA 2021: Knowledge-based Preprocessing and Coverage-oriented Reranking for Medical Question Summarization. BioNLP@NAACL-HLT (2021)
Hoang-Quynh Le, Quoc-An Nguyen, Quoc-Hung Duong, Minh-Quang Nguyen, Huy-Son Nguyen, Tam Doan Thanh, Hai-Yen Thi Vuong, Trang M. Nguyen
UETfishes at MEDIQA 2021: Standing-on-the-Shoulders-of-Giants Model for Abstractive Multi-answer Summarization. BioNLP@NAACL-HLT (2021)
Spandana Balumuri, Sony Bachina, Sowmya Kamath S.
SB_NITK at MEDIQA 2021: Leveraging Transfer Learning for Question Summarization in Medical Domain. BioNLP@NAACL-HLT (2021)
Gjorgjina Cenikj, Tome Eftimov, Barbara Korousic-Seljak
SAFFRON: tranSfer leArning For Food-disease RelatiOn extractioN. BioNLP@NAACL-HLT (2021)
Proceedings of the 20th Workshop on Biomedical Language Processing, BioNLP@NAACL-HLT 2021, Online, June 11, 2021 BioNLP@NAACL-HLT (2021)
Lana Yeganova, Won Kim, Donald C. Comeau, W. John Wilbur, Zhiyong Lu
Measuring the relative importance of full text sections for information retrieval from scientific literature. BioNLP@NAACL-HLT (2021)
Diwakar Mahajan, Ching-Huei Tsou, Jennifer J. Liang
IBMResearch at MEDIQA 2021: Toward Improving Factual Correctness of Radiology Report Abstractive Summarization. BioNLP@NAACL-HLT (2021)
Ravi Kondadadi, Sahil Manchanda, Jason Ngo, Ronan McCormack
Optum at MEDIQA 2021: Abstractive Summarization of Radiology Reports using simple BART Finetuning. BioNLP@NAACL-HLT (2021)
William P. Hogan, Yoshiki Vazquez-Baeza, Yannis Katsis, Tyler Baldwin, Ho-Cheol Kim, Chun-Nan Hsu
BLAR: Biomedical Local Acronym Resolver. BioNLP@NAACL-HLT (2021)
Emilee Holtzapple, Brent Cochran, Natasa Miskov-Zivanov
Context-aware query design combines knowledge and data for efficient reading and reasoning. BioNLP@NAACL-HLT (2021)
Mario Sänger, Leon Weber, Ulf Leser
WBI at MEDIQA 2021: Summarizing Consumer Health Questions with Generative Transformers. BioNLP@NAACL-HLT (2021)
Peng Su, Yifan Peng, K. Vijay-Shanker
Improving BERT Model Using Contrastive Learning for Biomedical Relation Extraction. BioNLP@NAACL-HLT (2021)
Lung-Hao Lee, Po-Han Chen, Yu-Xiang Zeng, Po-Lei Lee, Kuo-Kai Shyu
NCUEE-NLP at MEDIQA 2021: Health Question Summarization Using PEGASUS Transformers. BioNLP@NAACL-HLT (2021)
Shweta Yadav, Mourad Sarrouti, Deepak Gupta
NLM at MEDIQA 2021: Transfer Learning-based Approaches for Consumer Question and Multi-Answer Summarization. BioNLP@NAACL-HLT (2021)
Mark-Christoph Müller, Sucheta Ghosh, Ulrike Wittig, Maja Rey
Word-Level Alignment of Paper Documents with their Electronic Full-Text Counterparts. BioNLP@NAACL-HLT (2021)
Chen Lin, Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Guergana Savova
EntityBERT: Entity-centric Masking Strategy for Model Pretraining for the Clinical Domain. BioNLP@NAACL-HLT (2021)
Liwen Xu, Yan Zhang, Lei Hong, Yi Cai, Szui Sung
ChicHealth @ MEDIQA 2021: Exploring the limits of pre-trained seq2seq models for medical summarization. BioNLP@NAACL-HLT (2021)
Jooyeon Lee, Huong Dang, Özlem Uzuner, Sam Henry
MNLP at MEDIQA 2021: Fine-Tuning PEGASUS for Consumer Health Question Summarization. BioNLP@NAACL-HLT (2021)
Sultan Alrowili, Vijay Shanker
BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA. BioNLP@NAACL-HLT (2021)
Zelalem Gero, Joyce C. Ho
Word centrality constrained representation for keyphrase extraction. BioNLP@NAACL-HLT (2021)
Vladimir Araujo, Andrés Carvallo, Carlos Aspillaga, Camilo Thorne, Denis Parra
Stress Test Evaluation of Biomedical Word Embeddings. BioNLP@NAACL-HLT (2021)
Amelie Wührl, Roman Klinger
Claim Detection in Biomedical Twitter Posts. BioNLP@NAACL-HLT (2021)
Minghao Zhu, Keyuan Jiang
Semi-Supervised Language Models for Identification of Personal Health Experiential from Twitter Data: A Case for Medication Effects. BioNLP@NAACL-HLT (2021)
Madhumita Sushil, Simon Suster, Walter Daelemans
Contextual explanation rules for neural clinical classifiers. BioNLP@NAACL-HLT (2021)
Songtai Dai, Quan Wang, Yajuan Lyu, Yong Zhu
BDKG at MEDIQA 2021: System Report for the Radiology Report Summarization Task. BioNLP@NAACL-HLT (2021)
Preethi Raghavan, Jennifer J. Liang, Diwakar Mahajan, Rachita Chandra, Peter Szolovits
emrKBQA: A Clinical Knowledge-Base Question Answering Dataset. BioNLP@NAACL-HLT (2021)
Duy-Cat Can, Vo Nguyen Quoc Bao, Quoc-Hung Duong, Minh-Quang Nguyen, Huy-Son Nguyen, Linh Nguyen Tran Ngoc, Quang-Thuy Ha, Mai-Vu Tran
UETrice at MEDIQA 2021: A Prosper-thy-neighbour Extractive Multi-document Summarization Model. BioNLP@NAACL-HLT (2021)
Jean-Benoit Delbrouck, Cassie Zhang, Daniel L. Rubin
QIAI at MEDIQA 2021: Multimodal Radiology Report Summarization. BioNLP@NAACL-HLT (2021)
Yang Liu, Yuanhe Tian, Tsung-Hui Chang, Song Wu, Xiang Wan, Yan Song
Exploring Word Segmentation and Medical Concept Recognition for Chinese Medical Texts. BioNLP@NAACL-HLT (2021)
Zheng Yuan, Yijia Liu, Chuanqi Tan, Songfang Huang, Fei Huang
Improving Biomedical Pretrained Language Models with Knowledge. BioNLP@NAACL-HLT (2021)
Damian Pascual, Sandro Luck, Roger Wattenhofer
Towards BERT-based Automatic ICD Coding: Limitations and Opportunities. BioNLP@NAACL-HLT (2021)
Pieter Fivez, Simon Suster, Walter Daelemans
Scalable Few-Shot Learning of Robust Biomedical Name Representations. BioNLP@NAACL-HLT (2021)