GENSiPS

Publications

2013

Anwoy Kumar Mohanty, Aniruddha Datta, Jijayanagaram Venkatraj
On the modeling of heterogeneity in cancer tissue. GENSiPS (2013)
Mohammadmahdi R. Yousefi
Compromised intervention policies for phenotype alteration. GENSiPS (2013)
Lori A. Dalton
Optimal neyman-pearson classification under Bayesian uncertainty models. GENSiPS (2013)
Po-Yen Wu, John H. Phan, May D. Wang
An approach for assessing RNA-seq quantification algorithms in replication studies. GENSiPS (2013)
Bilal Wajid, Ali Riza Ekti, Amina Noor, Erchin Serpedin, Muhammad Naeem Ayyaz, Hazem N. Nounou, Mohamed N. Nounou
Supersonic MiB. GENSiPS (2013)
Tianyi Yang, Nguyen T. Nguyen, Yufang Jin, Merry Lindsey
Parameter distribution estimation in first order ODE. GENSiPS (2013)
Mohammad Shahrokh Esfahani, Edward R. Dougherty
Effect of separate sampling on classification and the minimax criterion. GENSiPS (2013)
Anindya Bhadra, Veerabhadran Baladandayuthapani
Integrative sparse Bayesian analysis of high-dimensional multi-platform genomic data in glioblastoma. GENSiPS (2013)
Zhen Gao, Jianhua Ruan
A structure-based approach to predicting in vitro transcription factor-DNA interaction. GENSiPS (2013)
Arezou Koohi
Prediction of drug-target interactions using popular Collaborative Filtering methods. GENSiPS (2013)
Amin Zollanvari, Ulisses M. Braga-Neto, Edward R. Dougherty
Effect of mixing probabilities on the bias of cross-validation under separate sampling. GENSiPS (2013)
Jason M. Knight, Ivan Ivanov, Edward R. Dougherty
Bayesian multivariate Poisson model for RNA-seq classification. GENSiPS (2013)
Roozbeh Dehghannasiri, Byung-Jun Yoon, Edward R. Dougherty
Designing experiments for optimal reduction of uncertainty in gene regulatory networks. GENSiPS (2013)
Rajani Varghese, Sriram Sridharan, Aniruddha Datta, Jijayanagaram Venkatraj
Modeling hypoxia stress response pathways. GENSiPS (2013)
Hua Li, Jim Vallandingham, Jie Chen
SeqBBS: A change-point model based algorithm and R package for searching CNV regions via the ratio of sequencing reads. GENSiPS (2013)
Yi Yang, Si Li, Andrew S. Maxwell, Natalie D. Barker, Yan Peng, Ying Li, Haoni Li, Xi Wu, Peng Li, Tao Huang, Chenhua Zhang, Nan Wang, Edward J. Perkins, Chaoyang Zhang, Ping Gong
Deciphering chemically-induced reversible neurotoxicity by reconstructing perturbed pathways from time series microarray gene expression data. GENSiPS (2013)
Xiaoning Qian, Edward R. Dougherty
Phenotypically constrained Boolean network inference with prescribed steady states. GENSiPS (2013)
Osama A. Arshad, Priyadharshini S. Venkatasubramami, Aniruddha Datta, Jijayanagaram Venkatraj
Exploiting the cancer and diabetes metabolic connection for therapeutic purposes. GENSiPS (2013)
Nilanjana Banerjee, Sonia Chothani, Lyndsay N. Harris, Nevenka Dimitrova
Identifying RNAseq-based coding-noncoding co-expression interactions in breast cancer. GENSiPS (2013)
Rolando J. Olivares, Arvind U. K. Rao, Ganesh Rao, Jeffrey S. Morris, Veerabhadran Baladandayuthapani
Integrative analysis of multi-modal correlated imaging-genomics data in glioblastoma. GENSiPS (2013)
Yan Cui, Xiaodong Cai, Zhong Jin
Semi-supervised classification using sparse representation for cancer recurrence prediction. GENSiPS (2013)
Lingjia Kong, Kaisa-Leena Aho, Kirsi Granberg, Christophe Roos, Reija Autio
DBComposer: An R package for integrative analysis and management of gene expression microarray data. GENSiPS (2013)
Ying-Wooi Wan, John Nagorski, Genevera I. Allen, Zhaohui Li, Zhandong Liu
Identifying cancer biomarkers through a network regularized Cox model. GENSiPS (2013)
Qian Wan, Ranadip Pal
A multivariate random forest based framework for drug sensitivity prediction. GENSiPS (2013)
Belhassen Bayar, Nidhal Bouaynaya, Roman Shterenberg
Inference of genetic regulatory networks with unknown covariance structure. GENSiPS (2013)
Mario Flores, Yufei Huang, Yidong Chen
NetceRNA: An algorithm for construction of phenotype-specific regulation networks via competing endogenous RNAs. GENSiPS (2013)
Amina Noor, Aitzaz Ahmad, Erchin Serpedin, Mohamed N. Nounou, Hazem N. Nounou
ROBNCA: Robust Network Component Analysis for recovering transcription factor activities. GENSiPS (2013)
Alain B. Tchagang, Sieu Phan, Fazel Famili, Youlian Pan, Adrian Cutler, Jitao Zou
A generic model of transcriptional regulatory networks: Application to plants under abiotic stress. GENSiPS (2013)
Esmaeil Atashpaz-Gargari, Ulisses M. Braga-Neto, Edward R. Dougherty
Improved branch-and-bound algorithm for U-curve optimization. GENSiPS (2013)
Yu-Chiao Chiu, Eric Y. Chuang, Tzu-Hung Hsiao, Yidong Chen
Characterization of conditions for competing endogenous RNA regulation in GBM. GENSiPS (2013)
Xiangfang Li, Lijun Qian, Michael L. Bittner, Edward R. Dougherty
Drug effect study on proliferation and survival pathways on cell line-based platform: A stochastic hybrid systems approach. GENSiPS (2013)
Antti Larjo, Harri Lähdesmäki
Active learning for Bayesian network models of biological networks using structure priors. GENSiPS (2013)
Noah Berlow, Saad Haider, Ranadip Pal, Charles Keller
Quantifying the inference power of a drug screen for predictive analysis. GENSiPS (2013)
Xiaodong Cui, Jia Meng, Manjeet K. Rao, Yidong Chen, Yufei Huang
An HMM-based Exome Peak-finding package for RNA epigenome sequencing data. GENSiPS (2013)
Ting Chen, Ulisses M. Braga-Neto
Optimal Bayesian MMSE estimation of the coefficient of determination for discrete prediction. GENSiPS (2013)
Sriram Sridharan, Aniruddha Datta, Jijayanagaram Venkatraj
Boolean model to experimental validation: A preliminary attempt. GENSiPS (2013)
2013 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSiPS 2013, Houston, TX, USA, November 17-19, 2013 GENSiPS (2013)
Lori A. Dalton
On the optimality of k-means clustering. GENSiPS (2013)

2012