ICBO/ODLS

Publications

volume 2807, 2021

Proceedings of the 11th International Conference on Biomedical Ontologies (ICBO) joint with the 10th Workshop on Ontologies and Data in Life Sciences (ODLS) and part of the Bolzano Summer of Knowledge (BoSK 2020), Virtual conference hosted in Bolzano, Italy, September 17, 2020. ICBO/ODLS 2807 (2021)

2020

Paul Fabry, Adrien Barton, Jean-François Ethier
QUESTO - An Ontology for Questionnaires. ICBO/ODLS (2020)
Tiago Lubiana
Wikidata WikiProject COVID-19: Modelling the Pandemic in Real Time (short paper). ICBO/ODLS (2020)
Tiago Lubiana
Current OBO Ontologies Are Not Sufficient to Annotate COVID-19-Related Cell Types (short paper). ICBO/ODLS (2020)
Jona Thai, Michael Grüninger
A BioSequence Ontology from Molecular Structure. ICBO/ODLS (2020)
Yongqun He, Hong Yu, Edison Ong, Yang Wang, Yingtong Liu, Anthony Huffman, Hsin-Hui Huang, John Beverley, Asiyah Yu Lin, William D. Duncan, Sivaram Arabandi, Jiangan Xie, Junguk Hur, Xiaolin Yang, Luonan Chen, Gilbert S. Omenn, Brian D. Athey, Barry Smith
CIDO: The Community-Based Coronavirus Infectious Disease Ontology. ICBO/ODLS (2020)
Jonathan P. Bona
A Python Utility for Working with OBO Foundry Terms (short paper). ICBO/ODLS (2020)
Laurent A. Winckers, Egon L. Willighagen
Expanding the eNanoMapper Ontology (short paper). ICBO/ODLS (2020)
Rolf Grütter, C. Maria Keet
Towards a Framework for Meaning Negotiation and Conflict Resolution in Ontology Authoring. ICBO/ODLS (2020)
Hayden Freedman, Mark A. Miller, Heather Williams, Christian J. Stoeckert Jr.
Scaling and Querying a Semantically Rich, Electronic Healthcare Graph. ICBO/ODLS (2020)
Elizabeth T. Hobbs, Stephen M. Goralski, Ashley Mitchell, Andrew Simpson, Dorjan Leka, Emmanuel Kotey, Matt Sekira, James B. Munro, Suvarna Nadendla, Rebecca Jackson, Aitor Gonzalez-Agirre, Martin Krallinger, Michelle G. Giglio, Ivan Erill
Corpora as Evolving Entities: Embedding Corpora in Biomedical Ontologies. ICBO/ODLS (2020)
Ademar Crotti Jr., Maryam Basereh, Yalemisew M. Abgaz, Junli Liang, Natalia Duda, Nick McDonald, Rob Brennan
The ARK Platform: Enabling Risk Management Through Semantic Web Technologies. ICBO/ODLS (2020)
Anthony Huffman, Yongqun He
OGG-CoV: Ontology Representation and Analysis of Genes and Genomes of Coronaviruses (short paper). ICBO/ODLS (2020)
Jana Vatascinová, Viet Bach Nguyen, Vojtech Svátek, Ondrej Zamazal
Best-Practice Patterns for Biomedical Ontologies: Moving Under the Meta-Modeling Hood (short paper). ICBO/ODLS (2020)
Paul Fabry, Adrien Barton, Jean-François Ethier
An Ontological Representation of Sex and Gender Information (short paper). ICBO/ODLS (2020)
Patrice Buche, Julien Cufi, Stéphane Dervaux, Juliette Dibie, Liliana Ibanescu, Alrick Oudot, Magalie Weber
A New Alignment Method Based on FoodOn as Pivot Ontology to Manage Incompleteness in Nutritional Legacy Data Sources (short paper). ICBO/ODLS (2020)
Lauren Wishnie, Alexander P. Cox, Alexander D. Diehl, Werner Ceusters
Foundations for a Realism-Based Ontology of Protein Aggregates. ICBO/ODLS (2020)
Pierre Lemordant, Bernard Gibaud, Cyril Garde, Sébastien Delarche, Didier Goudet, Marc Cuggia
Ontology-Based Classification of Radiological Procedures for Consistent Sharing in Clinical Data Warehouses. ICBO/ODLS (2020)
Georgeta Bordea, Jean Noël Nikiema, Romain Griffier, Thierry Hamon, Fleur Mougin
FIDEO: Food Interactions with Drugs Evidence Ontology. ICBO/ODLS (2020)
Louis P. Ter Meer, Jan Hazelzet, Marleen de Mul
An Ontological Model for the (Digital) Patient (short paper). ICBO/ODLS (2020)
Laurel Cooper, Marie-Angélique Laporte, Justin Elser, Victoria Carollo Blake, Taner Z. Sen, Chris Mungall, Elizabeth Arnaud, Pankaj Jaiswal
The Plant Trait Ontology Links Wheat Traits for Crop Improvement and Genomics (short paper). ICBO/ODLS (2020)
Nicole A. Vasilevsky, Shahim Essaid, Nicolas Matentzoglu, Nomi L. Harris, Melissa A. Haendel, Peter N. Robinson, Christopher J. Mungall
Mondo Disease Ontology: Harmonizing Disease Concepts Across the World (short paper). ICBO/ODLS (2020)
Mark A. Miller, Hayden Freedman, Christian J. Stoeckert Jr.
A Robust, Self-Training Classifier for Medication Strings, with Quantitative and Semantic Confidence Metrics. ICBO/ODLS (2020)
Asiyah Yu Lin, Stephan Gebel, Qingliang Leon Li, Sumit Madan, Johannes Darms, Evan Bolton, Barry Smith, Martin Hofmann-Apitius, Yongqun Oliver He, Alpha Tom Kodamullil
CTO: A Community-Based Clinical Trial Ontology and Its Applications in PubChemRDF and SCAIView. ICBO/ODLS (2020)
Gorjan Popovski, Gordana Ispirova, Eva Valencic, Riste Stojanov, Tome Eftimov, Barbara Korousic-Seljak
An Insight into Food Semantics: Review, Analysis, and Lessons Learnt over Food-Related Studies (short paper). ICBO/ODLS (2020)
Adrien Barton, Fumiaki Toyoshima, Jean-François Ethier
Clinical Documents and Their Parts. ICBO/ODLS (2020)
Amir Laadhar, Élcio Abrahão, Clément Jonquet
Investigating One Million XRefs in Thirthy Ontologies from the OBO World. ICBO/ODLS (2020)