XSEDE

Publications

2016

David M. Rogers
Efficient Primitives for Standard Tensor Linear Algebra. XSEDE (2016)
Marcus Slavenas, Paul Rodríguez, Alan B. Craig, Elizabeth Wuerffel, Jeffrey Will
Image Analysis and Infrastructure Support for Data Mining the Farm Security Administration: Office of War Information Photography Collection. XSEDE (2016)
Francisco Castejón, Antonio Gómez-Iglesias, Antonio López-Fraguas
Optimization of 3D Fusion Devices. XSEDE (2016)
Esthela Gallardo, Patricia J. Teller, Arturo Argueta, Jaime Jaloma
Cross-Accelerator Performance Profiling. XSEDE (2016)
Cameron W. Smith, Brian Granzow, Dan Ibanez, Onkar Sahni, Kenneth E. Jansen, Mark S. Shephard
In-memory Integration of Existing Software Components for Parallel Adaptive Unstructured Mesh Workflows. XSEDE (2016)
Ruizhu Huang, Weijia Xu, Robert McLay
A web interface for XALT log data analysis. XSEDE (2016)
Reuben D. Budiardja, Kapil Agrawal, Mark R. Fahey, Robert T. McLay, Doug James
Library Function Tracking with XALT. XSEDE (2016)
Junqi Yin, Thomas Anthony, Jon Marstrander, Yuliang Liu, Chad Burdyshaw, Mitchel D. Horton, Lonnie D. Crosby, R. Glenn Brook, Frank Skidmore
Optimization of non-linear image registration in AFNI. XSEDE (2016)
Supun Nakandala, Sudhakar Pamidighantam, Shameera Yodage, Nipurn Doshi, Eroma Abeysinghe, Chathuri Peli Kankanamalage, Suresh Marru, Marlon E. Pierce
Anatomy of the SEAGrid Science Gateway. XSEDE (2016)
Tyler McDaniel, Eduardo F. D'Azevedo, Ying Wai Li, Paul R. C. Kent, Ming Wong, Kwai Wong
Delayed Update Algorithms for Quantum Monte Carlo Simulation on GPU: Extended Abstract. XSEDE (2016)
Henry Neeman, Aaron Bergstrom, Dana Brunson, Carrie L. Ganote, Zane Gray, Brian Guilfoos, Robert Kalescky, Evan Lemley, Brian G. Moore, Sai Kumar Ramadugu, Alana Romanella, Johnathan Rush, Andrew H. Sherman, Brian Stengel, Dan Voss
The Advanced Cyberinfrastructure Research and Education Facilitators Virtual Residency: Toward a National Cyberinfrastructure Workforce. XSEDE (2016)
Ahmet Artu Yildirim, David Tarboton, Yan Liu, Nazmus Shams Sazib, Shaowen Wang
Accelerating TauDEM for Extracting Hydrology Information from National-Scale High Resolution Topographic Dataset: Extended Abstract. XSEDE (2016)
Tyson L. Swetnam, J. D. Pelletier, C. Rasmussen, N. R. Callahan, Nirav C. Merchant, Eric Lyons, Mats Rynge, Yan Liu, Viswanath Nandigam, Christopher J. Crosby
Scaling GIS analysis tasks from the desktop to the cloud utilizing contemporary distributed computing and data management approaches: A case study of project-based learning and cyberinfrastructure concepts. XSEDE (2016)
Semir Sarajlic, Neranjan Edirisinghe, Yuriy Lukinov, Michael Walters, Brock Davis, Gregori Faroux
Orion: Discovery Environment for HPC Research and Bridging XSEDE Resources. XSEDE (2016)
Chui-Hui Chiu, Nathan Lewis, Dipak Kumar Singh, Arghya Kusum Das, Mohammad M. Jalazai, Richard Platania, Sayan Goswami, Kisung Lee, Seung-Jong Park
BIC-LSU: Big Data Research Integration with Cyberinfrastructure for LSU. XSEDE (2016)
Kiumars Soltani, Aiman Soliman, Anand Padmanabhan, Shaowen Wang
UrbanFlow: Large-scale Framework to Integrate Social Media and Authoritative Landuse Maps. XSEDE (2016)
Noushin Ghaffari, Jordi Abante, Raminder Singh, Philip D. Blood, Charles D. Johnson
Computational Considerations in Transcriptome Assemblies and Their Evaluation, using High Quality Human RNA-Seq data. XSEDE (2016)
Don Liu, Yonglai Zheng, Arden Moore
Three Dimensional Simulations of Fluid Flow and Heat Transfer with Spectral Element Method. XSEDE (2016)
Nikolay A. Simakov, Robert L. DeLeon, Joseph P. White, Thomas R. Furlani, Martins Innus, Steven M. Gallo, Matthew D. Jones, Abani K. Patra, Benjamin D. Plessinger, Jeanette M. Sperhac, Thomas Yearke, Ryan Rathsam, Jeffrey T. Palmer
A Quantitative Analysis of Node Sharing on HPC Clusters Using XDMoD Application Kernels. XSEDE (2016)
Christopher S. Thompson, Steven M. Clark, Carol X. Song
The XSEDE BLAST Gateway: Leveraging Campus Development for the XSEDE Community. XSEDE (2016)
Roberto Camacho Barranco, Patricia J. Teller, Michael Gerndt
Minimization of Xeon Phi Core Use with Negligible Execution Time Impact. XSEDE (2016)
Hao Hu, Xingchen Hong, Jeff Terstriep, Yan Y. Liu, Michael P. Finn, Johnathan Rush, Jeffrey Wendel, Shaowen Wang
TopoLens: Building a CyberGIS Community Data Service for Enhancing the Usability of High-resolution National Topographic Datasets. XSEDE (2016)
Mark A. Miller, Terri Schwartz, Wayne Pfeiffer
User behavior and usage patterns for a highly accessed science gateway. XSEDE (2016)
David E. Hudak, Douglas Johnson, Jeremy W. Nicklas, Eric Franz, Brian McMichael, Basil Gohar
Open OnDemand: Transforming Computational Science Through Omnidisciplinary Software Cyberinfrastructure. XSEDE (2016)
Kyle Chard, Steven Tuecke, Ian T. Foster
Globus: Recent Enhancements and Future Plans. XSEDE (2016)
Amit Chourasia, Mona Wong-Barnum, Dmitry Mishin, David R. Nadeau, Michael L. Norman
SeedMe: A scientific data sharing and collaboration platform. XSEDE (2016)
Nuwan Goonasekera, Andrew Lonie, James Taylor, Enis Afgan
CloudBridge: a Simple Cross-Cloud Python Library. XSEDE (2016)
Spencer Julian, Michael Shuey, Seth Cook
Containers in Research: Initial Experiences with Lightweight Infrastructure. XSEDE (2016)
Ruby Mendenhall, Nicole M. Brown, Michael L. Black, Mark Van Moer, Ismini Lourentzou, Karen Flynn, Malaika Mckee, Assata Zerai
Rescuing Lost History: Using Big Data to Recover Black Women's Lived Experiences. XSEDE (2016)
Arthur W. Wetzel, Jennifer Bakal, Markus Dittrich
A Virtual File System for On-Demand Processing of Multidimensional Datasets. XSEDE (2016)
Rick Wagner, Philip M. Papadopoulos, Dmitry Mishin, Trevor Cooper, Mahidhar Tatineni, Gregor von Laszewski, Fugang Wang, Geoffrey C. Fox
User Managed Virtual Clusters in Comet. XSEDE (2016)
David Hart, Melissa Rishel, Doug Nychka
Estimating the Accuracy of User Surveys for Assessing the Impact of HPC Systems. XSEDE (2016)
Scott McClary, Robert Henschel, Abhinav Thota, Holger Brunst, Benjamin Draper
Improving the Scalability of a Charge Detection Mass Spectrometry Workflow. XSEDE (2016)
Antonio Gómez-Iglesias, Carlos Rosales, Todd Evans
Practical Monitoring of Resource Utilization for HPC Applications. XSEDE (2016)
Hui Liu, Peng Zhang, Kun Wang, Bo Yang, Zhangxin Chen
Performance and Scalability Analysis for Parallel Reservoir Simulations on Three Supercomputer Architectures. XSEDE (2016)
Smruti Padhy, Jay Alameda, Rob Kooper, Rui Liu, Sandeep Puthanveetil Satheesan, Inna Zharnitsky, Gregory Jansen, Michael C. Dietze, Praveen Kumar, Jong Lee, Richard Marciano, Luigi Marini, Barbara S. Minsker, Chris Navarro, Marcus Slavenas, William C. Sullivan, Kenton McHenry
An Architecture for Automatic Deployment of Brown Dog Services at Scale into Diverse Computing Infrastructures. XSEDE (2016)
Drew Schmidt, Wei-Chen Chen, George Ostrouchov
Introducing a New Client/Server Framework for Big Data Analytics with the R Language. XSEDE (2016)
Linda Akli, Jay Alameda, Steven I. Gordon, Marcela Madrid, Lorna I. Rivera
XSEDE Training: Achieving Access and Inclusion. XSEDE (2016)
Craig A. Stewart, David Y. Hancock, Matthew Vaughn, Jeremy Fischer, Tim Cockerill, Liming Lee, Nirav C. Merchant, Therese Miller, John Michael Lowe, Daniel C. Stanzione Jr., James Taylor, Edwin Skidmore
Jetstream: performance, early experiences, and early results. XSEDE (2016)
Ricardo González-Méndez, Jimmy Torres, Pallavi Ishwad, Hugh B. Nicholas Jr., Alexander Ropelewski
Assisting Bioinformatics Programs at Minority Institutions: Needs Assessment, and Lessons Learned - A Look at an Internship Program. XSEDE (2016)
Kerk F. Kee, Mona Sleiman, Michelle Williams, Dominique Stewart
The 10 Attributes that Drive Adoption and Diffusion of Computational Tools in E-Science. XSEDE (2016)
Robert S. Sinkovits, Michael G. Duda
Optimization and parallel load balancing of the MPAS Atmosphere Weather and Climate Code. XSEDE (2016)
Eric Coulter, Jeremy Fischer, Barbara Hallock, Richard Knepper, Craig A. Stewart
Implementation of Simple XSEDE-Like Clusters: Science Enabled and Lessons Learned. XSEDE (2016)
Daniel Jacob Tward, Anthony Kolasny, Chelsea S. Sicat, Timothy Brown, Michael I. Miller
Tools for studying populations and timeseries of neuroanatomy enabled through GPU acceleration in the Computational Anatomy Gateway. XSEDE (2016)
Wendy K. Tam Cho, Yan Y. Liu
A Parallel Evolutionary Algorithm for Subset Selection in Causal Inference Models. XSEDE (2016)
Kwai Wong, Gregory D. Peterson
Challenges and Accomplishments of the Computational Science Undergraduate Research Experiences Program. XSEDE (2016)
Victor Hazlewood, Kathy Benninger, Gregory D. Peterson, Jason Charcalla, Benny Sparks, Jesse Hanley, Andrew Adams, Bryan Learn, Robert Budden, Derek Simmel, Joseph Lappa, Jared Yanovich
Developing Applications with Networking Capabilities via End-to-End SDN (DANCES). XSEDE (2016)
Gerard Vanloo, Chung Ng, Kison Osborne, Kwai Wong, Ben Ramsey, Dali Wang, Zhirong Bao
Using High Performance Computing to Model Cellular Embryogenesis. XSEDE (2016)
Kornelijus Survila, Ahmet Artu Yildirim, Ting Li, Yan Y. Liu, David G. Tarboton, Shaowen Wang
A Scalable High-performance Topographic Flow Direction Algorithm for Hydrological Information Analysis. XSEDE (2016)
Amitava Majumdar, Subhashini Sivagnanam, Kenneth Yoshimoto, Ted Carnevale
Understanding the Evolving Cyberinfrastructure Needs of the Neuroscience Community. XSEDE (2016)