Pacific Symposium on Biocomputing

Publications

2017

Biocomputing 2017: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2017 Pacific Symposium on Biocomputing (2017)

2016

Biocomputing 2016: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 4-8, 2016 Pacific Symposium on Biocomputing (2016)

2015

Benjamin S. Glicksberg, Li Li, Wei-Yi Cheng, Khader Shameer, Jörg Hakenberg, Rafael Castellanos, Meng Ma, Lisong Shi, Hardik Shah, Joel T. Dudley, Rong Chen
An Integrative Pipeline for Multi-Modal Discovery of Disease Relationships. Pacific Symposium on Biocomputing (2015)
Hua Fan-Minogue, Bin Chen, Weronika Sikora-Wohlfeld, Marina Sirota, Atul J. Butte
A Systematic Assessment of Linking Gene Expression with Genetic Variants for Prioritizing Candidate Targets. Pacific Symposium on Biocomputing (2015)
Amit G. Deshwar, Shankar Vembu, Quaid Morris
Comparing Nonparametric Bayesian Tree Priors for Clonal Reconstruction of Tumors. Pacific Symposium on Biocomputing (2015)
Kristine A. Pattin, Anna C. Greene, Russ B. Altman, Kevin Bretonnel Cohen, Elizabeth Wethington, Carsten Görg, Lawrence E. Hunter, Spencer V. Muse, Predrag Radivojac, Jason H. Moore
Training the Next Generation of Quantitative Biologists in the Era of Big Data. Pacific Symposium on Biocomputing (2015)
Svetlana Lockwood, Bala Krishnamoorthy
Topological Features in Cancer Gene Expression Data>. Pacific Symposium on Biocomputing (2015)
Subhajit Sengupta, Jing Wang, Juhee Lee, Peter Müller, Kamalakar Gulukota, Arunava Banerjee, Yuan Ji
BayClone: Bayesian Nonparametric Inference of Tumor Subclones Using NGS Data. Pacific Symposium on Biocomputing (2015)
Robert Leaman, Benjamin M. Good, Andrew I. Su, Zhiyong Lu
Session Introduction. Pacific Symposium on Biocomputing (2015)
David J. Odgers, Rave Harpaz, Alison Callahan, Gregor Stiglic, Nigam H. Shah
Analyzing Search Behavior of Healthcare Professionals for Drug Safety Surveillance. Pacific Symposium on Biocomputing (2015)
Biocomputing 2015: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 4-8, 2015 Pacific Symposium on Biocomputing (2015)
Oznur Tastan, Yanjun Qi, Jaime G. Carbonell, Judith Klein-Seetharaman
Refining Literature Curated Protein Interactions Using Expert Opinions. Pacific Symposium on Biocomputing (2015)
Tianxiang Gao, Petter Brodin, Mark M. Davis, Vladimir Jojic
Drug-induced mRNA Signatures Are Enriched for the Minority of Genes that Are Highly Heritable. Pacific Symposium on Biocomputing (2015)
Richard Gayle, Mark E. Minie, Erik J. Nilsson
Inviting the Public: The Impact on Informatics Arising from Emerging Global Health Research Paradigms. Pacific Symposium on Biocomputing (2015)
Chirag J. Patel, Arjun K. Manrai
Development of Exposome Correlations Globes to Map Out Environment-Wide Associations. Pacific Symposium on Biocomputing (2015)
Tao Yang, Xinlin Zhao, Binbin Lin, Tao Zeng, Shuiwang Ji, Jieping Ye
Automated Gene Expression Pattern Annotation in the Mouse Brain. Pacific Symposium on Biocomputing (2015)
Molly A. Hall, Shefali S. Verma, Dennis P. Wall, Jason H. Moore, Brendan Keating, Daniel B. Campbell, Gregory Gibson, Folkert W. Asselbergs, Sarah A. Pendergrass
Session Introduction. Pacific Symposium on Biocomputing (2015)
Jean Binder, Stéphanie Boué, Anselmo Di Fabio, Brett Fields, William Hayes, Julia Hoeng, Jennifer Park, Manuel C. Peitsch
Reputation-Based Collaborative Network Biology. Pacific Symposium on Biocomputing (2015)
Lili Wang, Parvin Mousavi, Sergio Baranzini
iPINBPA: An Integrative Network-Based Functional Module Discovery Tool for Genome-Wide Association Studies. Pacific Symposium on Biocomputing (2015)
Dokyoon Kim, Ruowang Li, Scott M. Dudek, John R. Wallace, Marylyn D. Ritchie
Binning Somatic Mutations Based on Biological Knowledge for Predicting Survival: An Application in Renal Cell Carcinoma. Pacific Symposium on Biocomputing (2015)
Ting Hu, Christian Darabos, Maria E. Cricco, Emily Kong, Jason H. Moore
Genome-Wide Genetic Interaction Analysis of Glaucoma Using Expert Knowledge Derived from Human Phenotype Networks. Pacific Symposium on Biocomputing (2015)
James M. Sikela
Human Evolutionary Genomics and the Search for the Genes that Made Us Human. Pacific Symposium on Biocomputing (2015)
Grace T. Huang, Ioannis Tsamardinos, Vineet K. Raghu, Naftali Kaminski, Panayiotis V. Benos
T-ReCS: Stable Selection of Dynamically Formed Groups of Features with Application to Prediction of Clinical Outcomes. Pacific Symposium on Biocomputing (2015)
Sara Nasser, Ahmet A. Kurdolgu, Tyler Izatt, Jessica Aldrich, Megan L. Russell, Alexis Christoforides, Waibhav Tembe, Jeffery A. Keifer, Jason J. Corneveaux, Sara A. Byron, Karen M. Forman, Clarice Zuccaro, Jonathan J. Keats, Patricia M. LoRusso, John D. Carpten, Jeffrey M. Trent, David W. Craig
An Integrated Framework for Reporting Clinically Relevant Biomarkers from Paired Tumor/Normal Genomic and Transcriptomic Sequencing Data In Support of Clinical Trials in Personalized Medicine. Pacific Symposium on Biocomputing (2015)
Janina M. Jeff, Kristin Brown-Gentry, Dana C. Crawford
Identification of Gene-Gene and Gene-Environment Interactions Within the Fibrinogen Gene Cluster for Fibrinogen Levels in Three Ethnically Diverse Populations. Pacific Symposium on Biocomputing (2015)
Inanç Birol, Anthony Raymond, Readman Chiu, Ka Ming Nip, Shaun D. Jackman, Maayan Kreitzman, T. Roderick Docking, Catherine A. Ennis, A. Gordon Robertson, Aly Karsan
KLEAT: Cleavage Site Analysis of Transcriptomes. Pacific Symposium on Biocomputing (2015)
In Sock Jang, Rodrigo Dienstmann, Adam A. Margolin, Justin Guinney
Stepwise Group Sparse Regression (SGSR): Gene-Set-Based Pharmacogenomic Predictive Models with Stepwise Selection of Functional Priors. Pacific Symposium on Biocomputing (2015)
Menghua Wu, Marina Sirota, Atul J. Butte, Bin Chen
Characteristics of Drug Combination Therapy in Oncology by Analyzing Clinical Trial Data on Clinicaltrials.Gov. Pacific Symposium on Biocomputing (2015)
Joel T. Dudley, Jennifer Listgarten, Oliver Stegle, Steven E. Brenner, Leopold Parts
Session introduction. Pacific Symposium on Biocomputing (2015)
Benjamin M. Good, Max Nanis, Chunlei Wu, Andrew I. Su
Microtask Crowdsourcing for Disease Mention Annotation in PubMed Abstracts. Pacific Symposium on Biocomputing (2015)
Emily Rose Holzinger, Silke Szymczak, Abhijit Dasgupta, James D. Malley, Qing Li, Joan E. Bailey-Wilson
Variable Selection Method for the Identification of Epistatic Models. Pacific Symposium on Biocomputing (2015)
Rui Chang, Jonathan R. Karr, Eric E. Schadt
Causal Inference in Biology Networks with Integrated Belief Propagation. Pacific Symposium on Biocomputing (2015)
Michael A. Hinterberg, David P. Kao, Michael R. Bristow, Lawrence E. Hunter, J. David Port, Carsten Görg
PEAX: Interactive Visual Analysis and Exploration of Complex Clinical Phenotype and Gene Expression Association. Pacific Symposium on Biocomputing (2015)
Nicole A. Restrepo, Sabrina L. Mitchell, Robert J. Goodloe, Deborah G. Murdock, Jonathan L. Haines, Dana C. Crawford
Mitochondrial Variation and the Risk of Age-Related Macular Degeneration Across Diverse Populations. Pacific Symposium on Biocomputing (2015)
Jérôme Waldispühl, Arthur Kam, Paul P. Gardner
Crowdsourcing RNA Structural Alignments with an Online Computer Game. Pacific Symposium on Biocomputing (2015)
Vasant G. Honavar
Discovery Informatics in Biological and Biomedical Sciences: Research Challenges and Opportunities. Pacific Symposium on Biocomputing (2015)
Hoifung Poon, Kristina Toutanova, Chris Quirk
Distant Supervision for Cancer Pathway Extraction from Text. Pacific Symposium on Biocomputing (2015)
Keith A. Ching, Kai Wang, Zhengyan Kan, Julio Fernández, Wenyan Zhong, Jarek Kostrowicki, Tao Xie, Zhou Zhu, Jean-François Martin, Maria Koehler, Kim Arndt, Paul A. Rejto
Cell Index Database (CELLX): A Web Tool for Cancer Precision Medicine. Pacific Symposium on Biocomputing (2015)
Darla Hewett, Michelle Whirl Carrillo, Lawrence E. Hunter, Russ B. Altman, Teri E. Klein
A Twentieth Anniversary Tribute to PSB. Pacific Symposium on Biocomputing (2015)
Dana C. Crawford, Kristin Brown-Gentry, Mark J. Rieder
Measures of Exposure Impact Genetic Association Studies: An Example in Vitamin K Levels and VKORC1. Pacific Symposium on Biocomputing (2015)
Billur Engin, Matan Hofree, Hannah Carter
Identifying Mutation Specific Cancer Pathways Using a Structurally Resolved Protein Interaction Network. Pacific Symposium on Biocomputing (2015)
Kjong-Van Lehmann, André Kahles, Cyriac Kandoth, William Lee, Nikolaus Schultz, Oliver Stegle, Gunnar Rätsch
Integrative Genome-wide Analysis of the Determinants of RNA Splicing in Kidney Renal Clear Cell Carcinoma. Pacific Symposium on Biocomputing (2015)
Søren Brunak, Francisco M. de la Vega, Adam A. Margolin, Benjamin J. Raphael, Gunnar Rätsch, Joshua M. Stuart
Session Introduction. Pacific Symposium on Biocomputing (2015)
Sumit B. Makashir, Leah C. Kottyan, Matthew T. Weirauch
Meta-Analysis of Differential Gene Co-Expression: Application to Lupus. Pacific Symposium on Biocomputing (2015)
Jie Tan, Matthew Ung, Chao Cheng, Casey S. Greene
Unsupervised Feature Construction and Knowledge Extraction from Genome-Wide Assays of Breast Cancer with Denoising Autoencoders. Pacific Symposium on Biocomputing (2015)
James Diggans, Su Yeon Kim, Zhanzhi Hu, Daniel G. Pankratz, Mei G. Wong, Jessica Reynolds, Ed Y. Tom, Moraima Pagan, Robert J. Monroe, Juan Rosai, Virginia A. Livolsi, Richard B. Lanman, Richard T. Kloos, P. Sean Walsh, Giulia C. Kennedy
Machine Learning from Concept to Clinic: Reliable Detection of BRAF V600E DNA Mutations in Thyroid Nodules Using High-Dimensional RNA Expression Data. Pacific Symposium on Biocomputing (2015)
Christian Darabos, Emily D. Grussing, Maria E. Cricco, Kenzie A. Clark, Jason H. Moore
A Bipartite Network Approach to Inferring Interactions Between Environmental Exposures and Human Diseases. Pacific Symposium on Biocomputing (2015)
Zhi Nie, Tao Yang, Yashu Liu, Binbin Lin, Qingyang Li, Vaibhav A. Narayan, Gayle M. Wittenberg, Jieping Ye
Melancholic Depression Prediction by Identifying Representative Features in Metabolic and Microarray Profiles with Missing Values. Pacific Symposium on Biocomputing (2015)
Graciela Gonzalez, Chitta Baral, Jeff Kiefer, Suengchan Kim, Jieping Ye
Session Introduction. Pacific Symposium on Biocomputing (2015)

2014

Henry Han
A Novel Profile Biomarker Diagnosis for Mass Spectral Proteomics. Pacific Symposium on Biocomputing (2014)