ICBO/BioCreative

Publications

2016

Gully A. P. C. Burns, Anita de Waard, Pradeep Dasigi, Eduard H. Hovy
Cycles of Scientific Investigation in Discourse - Machine Reading Methods for the Primary Research Contributions of a Paper. ICBO/BioCreative (2016)
Damion M. Dooley, Emma J. Griffiths, Fiona S. L. Brinkman, William W. L. Hsiao
An OBI Ontology Datum Proof Sheet. ICBO/BioCreative (2016)
Fernanda Farinelli, Maurício Barcellos de Almeida, Peter L. Elkin, Barry Smith
Dealing with Elements of Medical Encounters: an Approach Based on the Ontological Realism. ICBO/BioCreative (2016)
Prashanti Manda, James P. Balhoff, Todd J. Vision
Measuring the Importance of Annotation Granularity to the Detection of Semantic Similarity Between Phenotype Profiles. ICBO/BioCreative (2016)
Jose F. Florez-Arango, Santiago Patiño-Giraldo, Jack W. Smith, M. Sriram Iyengar
Performance Evaluation Clinical Task Ontology(PECTO). ICBO/BioCreative (2016)
Joseph Utecht, John Judkins, Mathias Brochhausen, Terra Colvin Jr., J. Neil Otte, Nicholas Rogers, Robert Rose, Maria Alvi, Amanda Hicks, Jane Ball, Stephen M. Bowman, Robert T. Maxson, Rosemary Nabaweesi, Rohit Pradhan, Nels D. Sanddal, M. Eduard Tudoreanu, Robert J. Winchell
OOSTT: a Resource for Analyzing the Organizational Structures of Trauma Centers and Trauma Systems. ICBO/BioCreative (2016)
Ling Zheng, Yehoshua Perl, James Geller, Gai Elhanan
How to Summarize Big Knowledge Subjects. ICBO/BioCreative (2016)
Daniel Welch, Amanda Hicks, Josh Hanna, William R. Hogan
A Semantic Web Representation of Entire Populations. ICBO/BioCreative (2016)
Aaron Baer, Matthew Lange
Uc_Sense: An Ontology for Scientifically-based Unambiguous Characterization of Sensory Experiences. ICBO/BioCreative (2016)
Benjamin M. Good, Sebastian Burgstaller-Muehlbacher, Elvira Mitraka, Timothy Putman, Andrew I. Su, Andra Waagmeester
Opportunities and Challenges Presented by Wikidata in the Context of Biocuration. ICBO/BioCreative (2016)
Lucy Lu Wang, John H. Gennari, Neil F. Abernethy
An Analysis of Differences in Biological Pathway Resources. ICBO/BioCreative (2016)
Melissa D. Clarkson
Representation of Parts within the Foundational Model of Anatomy Ontology. ICBO/BioCreative (2016)
Fumiaki Toyoshima
Towards an Ontology of Schizophrenia. ICBO/BioCreative (2016)
Mélanie Courtot, James Malone, Chris Mungall
Ten Simple Rules for Biomedical Ontology Development. ICBO/BioCreative (2016)
Daniel R. Schlegel, Selja Seppälä, Peter L. Elkin
Definition Coverage in the OBO Foundry Ontologies: The Big Picture. ICBO/BioCreative (2016)
Funda Durupinar-Babur, Metin Can Siper, Ugur Dogrusoz, Istemi Bahceci, Ozgun Babur, Emek Demir
Collaborative Workspaces for Pathway Curation. ICBO/BioCreative (2016)
Jie Zheng, Jashon Cade, Brian P. Brunk, David S. Roos, Christian J. Stoeckert Jr., San James, Emmanuel Arinaitwe, Bryan Greenhouse, Grant Dorsey, Steven Sullivan, Jane M. Carlton, Gabriel Carrasco-Escobar, Dionicia Gamboa, Paula Maguina-Mercedes, Joseph Vinetz
Malaria Study Data Integration and Information Retrieval Based on OBO Foundry Ontologies. ICBO/BioCreative (2016)
Vimala Ponna, Aaron Baer, Matthew Lange
Cardiovascular Health and Physical Activity: A Model for Health Promotion and Decision Support Ontologies. ICBO/BioCreative (2016)
Mark Jensen
Sustainable Development Goals Interface Ontology. ICBO/BioCreative (2016)
William D. Duncan, Travis Allen, Jonathan P. Bona, Olivia Helfer, Barry Smith, Alan Ruttenberg, Alexander D. Diehl
The ImmPort Antibody Ontology. ICBO/BioCreative (2016)
Hande Küçük-McGinty, Saurabh Mehta, Yu Lin, Nooshin Nabizadeh, Vasileios Stathias, Dusica Vidovic, Amar Koleti, Christopher Mader, Jianbin Duan, Ubbo Visser, Stephan C. Schürer
Building Concordant Ontologies for Drug Discovery. ICBO/BioCreative (2016)
Emma J. Griffiths, Damion M. Dooley, Pier Luigi Buttigieg, Robert Hoehndorf, Fiona S. L. Brinkman, William W. L. Hsiao
FoodON: A Global Farm-to-Fork Food Ontology. ICBO/BioCreative (2016)
Sherri Matis-Mitchell
Text Mining for Drug Development: Gathering Insights to Support Decision Making. ICBO/BioCreative (2016)
Mathias Brochhausen, Philip E. Empey, Jodi Schneider, William R. Hogan, Richard D. Boyce
Adding Evidence Type Representation to DIDEO. ICBO/BioCreative (2016)
James A. Overton
Humane OWL: RDF and OWL for Humans. ICBO/BioCreative (2016)
Fernanda Farinelli, Maurício Barcellos de Almeida, Peter L. Elkin, Barry Smith
Dealing with Social and Legal Entities in the Obstetric and Neonatal Domain. ICBO/BioCreative (2016)
Jean-François Ethier, Ryeyan Taseen, Luc Lavoie, Adrien Barton
Improving the Semantics of Drug Prescriptions with a Realist Ontology. ICBO/BioCreative (2016)
Weijia Xu, Amit Gupta, Pankaj Jaiswal, Crispin Taylor, Patti Lockhart
Enhancing Information Accessibility of Publications with Text Mining and Ontology. ICBO/BioCreative (2016)
Saurabh Raghuvanshi
Semantic Digitization of Experimental Data in Biological Sciences. ICBO/BioCreative (2016)
James P. Balhoff
The Phenoscape Knowledgebase: Tools and APIs for Computing Across Phenotypes from Evolutionary Diversity and Model Organisms. ICBO/BioCreative (2016)
Michael Bada, Nicole A. Vasilevsky, Melissa A. Haendel, Lawrence Hunter
Gold-Standard Ontology-Based Annotation of Concepts in Biomedical Text in the CRAFT Corpus: Updates and Extensions. ICBO/BioCreative (2016)
Jean-Philippe F. Gourdine, Thomas O. Metz, David Koeller, Matthew H. Brush, Melissa A. Haendel
Building a Molecular Glyco-phenotype Ontology to Decipher Undiagnosed Diseases. ICBO/BioCreative (2016)
John Judkins, Joseph Utecht, Mathias Brochhausen
Easy Extraction of Terms and Definitions with OWL2TL. ICBO/BioCreative (2016)
Takeshi Imai, Emiko Yamada Shinohara, Masayuki Kajino, Ryota Sakurai, Kazuhiko Ohe, Kouji Kozaki, Riichiro Mizoguchi
An Ontological Framework for Representing Topological Information in Human Anatomy. ICBO/BioCreative (2016)
Amanda Damasceno de Souza, Mauricio Barcellos Almeida
Natural Language Definitions for the Leukemia Knowledge Domain. ICBO/BioCreative (2016)
Jonathan P. Bona, Selja Seppälä, Werner Ceusters
Analysis of SNOMED "Bleeding" Concepts & Terms. ICBO/BioCreative (2016)
Clément Jonquet, Anne Toulet, Elizabeth Arnaud, Sophie Aubin, Esther Dzalé Yeumo Kaboré, Vincent Emonet, John Graybeal, Mark A. Musen, Cyril Pommier, Pierre Larmande
Reusing the NCBO BioPortal Technology for Agronomy to Build AgroPortal. ICBO/BioCreative (2016)
Mona Alshahrani, Hussein Almashouq, Robert Hoehndorf
SPARQL2OWL: Towards Bridging the Semantic Gap Between RDF and OWL. ICBO/BioCreative (2016)
Nicole A. Vasilevsky, Mark Engelstad, Erin Foster, Chris Mungall, Peter N. Robinson, Sebastian Köhler, Melissa A. Haendel
Enhancing the Human Phenotype Ontology for Use by the Layperson. ICBO/BioCreative (2016)
Ceri E. Van Slyke, Yvonne M. Bradford, Christian Pich
Growth of the Zebrafish Anatomy Ontology: Expanded to Support Adult Morphology and Dynamic Changes in the Early Embryo. ICBO/BioCreative (2016)
Medha Devare, Céline Aubert, Marie-Angélique Laporte, Léo Valette, Elizabeth Arnaud, Pier Luigi Buttigieg
Data-driven Agricultural Research for Development: A Need for Data Harmonization Via Semantics. ICBO/BioCreative (2016)
Yongqun He, Zhaohui S. Qin, Jie Zheng
EGO: A Biomedical Ontology for Integrative Epigenome Representation and Analysis. ICBO/BioCreative (2016)
Benjamin M. Good, Timothy Putman, Andrew I. Su, Andra Waagmeester, Sebastian Burgstaller-Muehlbacher, Elvira Mitraka
Opportunities and Challenges Presented by Wikidata in the Context of Biocuration. ICBO/BioCreative (2016)
Karen E. Ross, Darren A. Natale, Cecilia N. Arighi, Sheng-Chih Chen, Hongzhan Huang, Gang Li, Jia Ren, Michael Wang, K. Vijay-Shanker, Cathy H. Wu
Scalable Text Mining Assisted Curation of PTM Proteoforms in the Protein Ontology. ICBO/BioCreative (2016)
Olivier Bodenreider
Identifying Missing Hierarchical Relations in SNOMED CT from Logical Definitions Based on the Lexical Features of Concept Names. ICBO/BioCreative (2016)
Jake Lever, Martin Jones, Steven J. Jones
CancerMine: Knowledge Base Construction for Personalised Cancer Treatment. ICBO/BioCreative (2016)
Caterina Caracciolo, Tom Baker, Elizabeth Arnaud
Global Agricultural Concept Scheme: A Hub for Agricultural Vocabularies. ICBO/BioCreative (2016)
Gaoussou Camara, Sylvie Desprès, Rim Djedidi, Moussa Lo
Towards a Schistosomiasis Ontology (IDOSCHISTO) Extending the Infectious Disease Ontology. ICBO/BioCreative (2016)
Marie-Angélique Laporte, Léo Valette, Laurel Cooper, Chris Mungall, Austin Meier, Pankaj Jaiswal, Elizabeth Arnaud
Comparison of Ontology Mapping Techniques to Map Plant Trait Ontologies. ICBO/BioCreative (2016)

volume 1747, 2016

Proceedings of the Joint International Conference on Biological Ontology and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016. ICBO/BioCreative 1747 (2016)