Efficient and Accurate OTU Clustering with GPU-Based Sequence Alignment and Dynamic Dendrogram Cutting.
Thuy-Diem NguyenBertil SchmidtZejun ZhengChee-Keong KwohPublished in: IEEE ACM Trans. Comput. Biol. Bioinform. (2015)
Keyphrases
- sequence alignment
- hierarchical clustering
- parameter free
- categorical data
- k means
- agglomerative hierarchical clustering
- self organizing maps
- clustering algorithm
- clustering method
- pairwise
- limited memory
- document clustering
- dynamic programming
- spectral clustering
- protein sequences
- memory efficient
- constrained clustering