Explainable Transcription Factor Prediction with Protein Language Models.
Liyuan GaoKyler ShuJun ZhangVictor. S. ShengPublished in: BIBM (2023)
Keyphrases
- language model
- dna binding
- language modeling
- transcription factors
- binding sites
- speech recognition
- probabilistic model
- document retrieval
- regulatory networks
- protein interaction
- retrieval model
- mixture model
- query expansion
- information retrieval
- protein structure prediction
- genome wide
- transcription factor binding sites
- microarray
- test collection
- dna sequences
- computational biology
- smoothing methods
- protein structure
- feature selection
- biological systems
- vector space model
- amino acids
- statistical tests