Leveraging Large Language Models for Predicting Microbial Virulence from Protein Structure and Sequence.
Felix QuintanaTodd J. TreangenLydia E. KavrakiPublished in: BCB (2023)
Keyphrases
- language model
- protein structure
- protein tertiary structure
- protein structural
- language modeling
- protein sequences
- sequence analysis
- n gram
- document retrieval
- probabilistic model
- molecular biology
- speech recognition
- secondary structure
- language modelling
- information retrieval
- retrieval model
- query expansion
- context sensitive
- relevance model
- statistical language models
- sequence alignment
- protein structure prediction
- amino acid sequences
- smoothing methods
- sequence data
- tertiary structure
- test collection
- psi blast
- vector space model
- amino acids
- nuclear magnetic resonance
- document ranking
- protein function
- pseudo relevance feedback
- contact map
- translation model
- protein structure alignment
- protein backbone
- document representation
- language models for information retrieval
- high throughput