Characterizing and optimizing the memory footprint of de novo short read DNA sequence assembly.
Jeffrey J. CookCraig B. ZillesPublished in: ISPASS (2009)
Keyphrases
- dna sequences
- memory footprint
- human genome
- motif discovery
- genomic sequences
- binding sites
- rna sequences
- tandem repeats
- memory usage
- problems in computational biology
- gene prediction
- gene structure prediction
- dna sequencing
- dna computing
- coding regions
- biological sequences
- transcription factors
- alternative splicing
- sequence patterns
- genome sequences
- databases