A novel pattern matching algorithm for genomic patterns related to protein motifs.
Mohammad-Hadi Foroughmand-AraabiSama GoliaeiBahram GoliaeiPublished in: J. Bioinform. Comput. Biol. (2020)
Keyphrases
- pattern matching algorithm
- pattern matching
- transcription factor binding sites
- dna binding
- matching algorithm
- aho corasick
- genome sequences
- string matching
- compression algorithm
- databases
- binding sites
- sequence data
- query patterns
- high throughput
- protein sequences
- tree patterns
- genome wide
- temporal patterns
- protein interaction
- genomic sequences
- amino acids
- dna sequences
- protein structure