Performance of Sequence Alignment Bioinformatics Applications on General Purpose Processors: A Case Study.
Pradeep S. NairEugene JohnPublished in: BIOCOMP (2006)
Keyphrases
- sequence alignment
- multiple sequence alignment
- general purpose processors
- pairwise
- protein structure prediction
- sequence databases
- protein sequences
- phylogenetic analysis
- case study
- computational biology
- dynamic programming
- molecular biology
- hardware implementation
- machine learning
- general purpose
- data flow
- binding sites
- multiple alignment
- data mining
- amino acids
- data analysis
- sequence analysis
- comparative genomics
- computing systems
- gene expression
- secondary structure
- fine grained
- signal processing
- pattern recognition