Hardware Acceleration of the Pair-HMM Algorithm for DNA Variant Calling.
Sitao HuangGowthami Jayashri ManikandanAnand RamachandranKyle RupnowWen-mei W. HwuDeming ChenPublished in: FPGA (2017)
Keyphrases
- optimal solution
- learning algorithm
- high accuracy
- experimental evaluation
- dynamic programming
- np hard
- optimization algorithm
- computationally efficient
- times faster
- linear programming
- cost function
- search algorithm
- similarity measure
- multi objective
- parallel implementation
- recognition algorithm
- objective function
- matching algorithm
- detection algorithm
- image processing algorithms
- forward backward
- random number generator
- segmentation algorithm
- theoretical analysis
- particle swarm optimization
- input data
- simulated annealing
- low cost
- hidden markov models
- k means
- pairwise