Multithreaded FPGA acceleration of DNA sequence mapping.
Edward FernandezWalid A. NajjarStefano LonardiJason R. VillarrealPublished in: HPEC (2012)
Keyphrases
- dna sequences
- dna sequencing
- dna computing
- human genome
- gene structure prediction
- tandem repeats
- sequence patterns
- problems in computational biology
- gene prediction
- high speed
- multi user
- biological sequences
- motif discovery
- binding sites
- hardware implementation
- field programmable gate array
- regulatory elements
- genomic sequences
- transcription factor binding sites
- coding regions
- data acquisition
- signal processing
- low cost