A genome alignment algorithm based on compression.
Minh Duc CaoTrevor I. DixLloyd AllisonPublished in: BMC Bioinform. (2010)
Keyphrases
- experimental evaluation
- detection algorithm
- improved algorithm
- search algorithm
- objective function
- optimal solution
- preprocessing
- particle swarm optimization
- times faster
- worst case
- dynamic programming
- computational cost
- recognition algorithm
- expectation maximization
- neural network
- np hard
- cost function
- k means
- search space
- matching algorithm
- mobile robot
- clustering method
- optimization algorithm
- simulated annealing
- computational complexity
- similarity measure