SPSO: Synthetic Protein Sequence Oversampling for Imbalanced Protein Data and Remote Homology Detection.
Majid BeigiAndreas ZellPublished in: ISBMDA (2006)
Keyphrases
- remote homology detection
- protein sequences
- protein classification
- class imbalance
- particle swarm optimization
- minority class
- computational biology
- protein structure
- protein function
- amino acids
- class distribution
- biological sequences
- support vector machine
- coarse grained
- sequence analysis
- secondary structure
- psi blast
- sequence databases
- amino acid sequences
- cost sensitive